Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g02353 ATGTTCAAGCTATCTCGCATGCTCCCTCTCACTTCCACTTCCAGGCATAGGCTGTTGGAAGTGCTGTCCTCTAGGAAAGTTGAAGTCGGAGACCGTCTTAGCCATTCAGCTGGCATTTCTACTGCTACAAATAACTATGCTGCCAAAGGATATGCTTCCGATCGAATATTTGCTCCTTATACTGTTTACAAGGGCAAAGCTGCATTCTCGTTGATCCCTTGTCTTCCAACTTTCACTAAGTTGAATTCTGGGACTGTTGTAGTTGATCGACGTGGTTCAATCATGATGACTTTCATGCATTCTATTGGAGAGCGCAAATATGACTGGGAGAAAAGACAAAGATTTGCTCTCTCAGCAACTGAAGTTGGTTCTTTGATAACAATGGGCGCTCAAGATTCCTGTGATTTCTTTCATGACCCTTCAATGTTATCAAGTAATGCTGGTCAAGTAAGGAAGAGCTTATCAATTAAGCCTCATGCAAATGGCTACTTTGTGTCTTTGACTGTTGTCAACAACCTGTTAAACACCAATGACTACTTCAGTGTTCCTGTCACAACTGCTGAGTTTGCTGTAATGAAGACAGCTTGCAGTTTTGCACTGCCACACATTATGGGTTGGGACCAGATAACTAATCAACAATCCAGAGGCATAGATGATCTTCAAGCAAAGGGTGACTCTAAAGTTTCAGACTTGGAATGGGAAAAATGA 708 0.4223 MFKLSRMLPLTSTSRHRLLEVLSSRKVEVGDRLSHSAGISTATNNYAAKGYASDRIFAPYTVYKGKAAFSLIPCLPTFTKLNSGTVVVDRRGSIMMTFMHSIGERKYDWEKRQRFALSATEVGSLITMGAQDSCDFFHDPSMLSSNAGQVRKSLSIKPHANGYFVSLTVVNNLLNTNDYFSVPVTTAEFAVMKTACSFALPHIMGWDQITNQQSRGIDDLQAKGDSKVSDLEWEK 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g02353 235 Pfam Whirly transcription factor 62 194 IPR013742 GO:0003697|GO:0006355|GO:0006952
Gma19g02353 235 SUPERFAMILY ssDNA-binding transcriptional regulator domain 53 214 IPR009044 GO:0003677|GO:0006355
Gma19g02353 235 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 1 235 IPR013742 GO:0003697|GO:0006355|GO:0006952
Gma19g02353 235 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 1 235 - -
Gma19g02353 235 Gene3D Transcriptional Coactivator Pc4; Chain A 46 217 IPR009044 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g02353 Gma-Chr19 52135388 52139310 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g02353 40 235 Whirly Transcription Factor Family AT1G71260 61.165 3.90e-88 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Gma19g02353 Whirly 6.7e-52 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g02353 - - gmx:100817863 459.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g02353 19 52135388 52139310 Gma03g02317 03 48367102 48370600 GST