Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g02349 ATGAGTTCCTCAAACTTTGAATCCCCTTACGAGTACTCTTGTTCTTCTTCATCCTCACGTCATAATCAGTATTCCCTTCCTTTCAACCACAATGACTCGCAAGAAATGCTCCTTTACCAAGTGCTGACACAGGCTGGTGCAACTTCCTCGGTGTCTCATGGTTCAGGTAGTGTTGTGGAAGCAGAGGTTTCGGTTTCGTACAGAGGGGTTCGAAGGAGGCCCTGGGGGAAGTTTGCGGCGGAGATAAGGGACTCTACGAGGAACGGAGTGAGGGTTTGGTTGGGAACCTTCGACACTGCCGAGGCTGCTGCGTTGGCTTACGACCAGGCCGCGCTGGTCATGAGAGGGTCCATGGCAGTGTTGAACTTCCCAGCTGAGATTGTTCGCCAATCGCTTCGGAACATGGAGCAGTACGGTAGTTTCCAAGAAGGCTCTTCTCCAGTTCTGGAGTTGAAGAAGAGGCACTCCATGAAGAGAAAATCAGAGACCAAGAAGCACCAACTCCACGATGTGATGGTGTTGGAGGACTTAGGGGCAGAGTATTTGGAACACCTTCTTACTCTCTCCCAGGATATGGATATGGATGCTTGTTAG 594 0.5067 MSSSNFESPYEYSCSSSSSRHNQYSLPFNHNDSQEMLLYQVLTQAGATSSVSHGSGSVVEAEVSVSYRGVRRRPWGKFAAEIRDSTRNGVRVWLGTFDTAEAAALAYDQAALVMRGSMAVLNFPAEIVRQSLRNMEQYGSFQEGSSPVLELKKRHSMKRKSETKKHQLHDVMVLEDLGAEYLEHLLTLSQDMDMDAC 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g02349 197 Pfam AP2 domain 67 116 IPR001471 GO:0003700|GO:0006355
Gma19g02349 197 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 20 190 - -
Gma19g02349 197 ProSiteProfiles AP2/ERF domain profile. 66 124 IPR001471 GO:0003700|GO:0006355
Gma19g02349 197 PRINTS Ethylene responsive element binding protein signature 67 78 IPR001471 GO:0003700|GO:0006355
Gma19g02349 197 PRINTS Ethylene responsive element binding protein signature 90 106 IPR001471 GO:0003700|GO:0006355
Gma19g02349 197 PANTHER DNA-BINDING DOMAIN 20 190 IPR044808 GO:0003700|GO:0009873
Gma19g02349 197 Gene3D AP2/ERF domain 66 126 IPR036955 GO:0003700|GO:0006355
Gma19g02349 197 SUPERFAMILY DNA-binding domain 67 126 IPR016177 GO:0003677
Gma19g02349 197 SMART rav1_2 66 130 IPR001471 GO:0003700|GO:0006355
Gma19g02349 197 CDD AP2 67 125 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g02349 Gma-Chr19 52092396 52093024 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g02349 26 191 AP2-EREBP Transcription Factor Family AT3G23240 52.486 2.04e-59 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gma19g02349 AP2 6.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g02349 K14516 - gmx:100787732 349.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00343 10 3245677 3246823 Gma19g02349 19 52092396 52093024 ECH
Gma19g02349 19 52092396 52093024 Gma19g02349 19 52092396 52093024 ECH
Gma19g02349 19 52092396 52093024 Gma13g01026 13 24384439 24385101 PCT