Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g02340 atgacgagaactccttgttgtgagagaatgggattgaagaagggaccttggactgctgaagaagatcagatattggtttctcatattcaacaatatggccatggaaactggcgtgcccttcctaaacaagctgGTTTGTTAaggtgtggcaagagttgtaggcttcgttggataaattacttgaggcctgatattaaacgagggaaattcagcaaagaagaagaacataccatcctaaagctacatggaattcttggaaacagATGGTCTGCTATAGCGGCAAGCTTACCCGGAAGAACAGACAACGAAATAAAGAATTTTTGGCATACCCATTTGAAGAAGAGGATCCAGAAAAGTGGAGTGCACAATGGCAATGCTTCCTCACGTATCTTGCAAGAGGCACAAGCAAATACTAGTTTGGATGCATCAAGTGCTGCTTCTAGTACTGTCACTGCAAATGTAATGATTGCCAATTACGGTTTACCCGTAAGGAATATTAATCCACCTATTGCAGGATTTTACGGTGCAGTCTCCTCAGATACTTTTGGAGAAATTGAGGACAATCATGGTTCTTGTCAGCTCAGTGAAGAAATGGAATTTTGGTACAATATATTTATCAAATCAGGGCAAACATCATGA 639 0.241 MTRTPCCERMGLKKGPWTAEEDQILVSHIQQYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGKFSKEEEHTILKLHGILGNRWSAIAASLPGRTDNEIKNFWHTHLKKRIQKSGVHNGNASSRILQEAQANTSLDASSAASSTVTANVMIANYGLPVRNINPPIAGFYGAVSSDTFGEIEDNHGSCQLSEEMEFWYNIFIKSGQTS 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g02340 212 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gma19g02340 212 CDD SANT 69 112 IPR001005 -
Gma19g02340 212 CDD SANT 16 61 IPR001005 -
Gma19g02340 212 PANTHER MYB TRANSCRIPTION FACTOR 1 210 - -
Gma19g02340 212 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 210 - -
Gma19g02340 212 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gma19g02340 212 SMART sant 66 114 IPR001005 -
Gma19g02340 212 SMART sant 13 63 IPR001005 -
Gma19g02340 212 Pfam Myb-like DNA-binding domain 17 76 - -
Gma19g02340 212 Gene3D - 13 66 - -
Gma19g02340 212 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gma19g02340 212 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gma19g02340 212 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Gma19g02340 212 Gene3D - 68 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g02340 Gma-Chr19 52002684 52004052 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g02340 1 205 MYB Transcription Factor Family AT2G31180 49.787 1.57e-72 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma19g02340 Myb_DNA-bind_6 3.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g02340 K09422 - gmx:102663040 431.795
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g02340 19 52002684 52004052 Gma03g02303 03 48229483 48230759 GST