Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g02286 ATGGCTTCTCAGCAACACGACGCCGTTTTCCGCGAAGAAGACATGGACGACGACGACGACGAGTCTCAGGAGGACGGAGACTACGAAGAAGAAGACGACGACGTTTTGGCCGACGACGAAGAAAACGAGCCCTCTCCCTCCACGGCTCTTGCCGTCACCGTCGCCGTCCCCGGTTCCTCCGTCTCCAACGGCGGTGCCGCTCCAATTTCGACGCCCACCGCCACCACCATCGTCGTCGCAGACTCCTCCGATCCGAAGCGGCGGCGCCTCGAGCCAGTCGAGGAGAAAAAGCCGCCGCCGACGCCGGACGACTCGCGGCGGCTGTTTCAGCGGCTGTGGACCGACGAGGACGAGATCGAGCTCTTGCAAGGCTTCCTAGACTACACCTCGCAGCGAGGATCCTCGCACCACAACGACACGGCTTTGTTCTACGACCAAATCAAGTCGAAGCTCCAACTCGATTTCAACAAGAACCAGCTCGTCGAGAAGATCCGAAGGCTGAAGAAGAAGTACCGAAACGTCCTCAACAAGATTGGCTCCGGCAAGGAATTCTCCTTCAAGAGCGCTCACGATCAAGCCACCTTCGAAATCTCGCGCAAGATCTGGAGCAACGTGACTCCAATCGGCGACAATTCCTTGGACGACGACGAAATCAACCCTAACCGTAGCCCCAACCCTAACCTTAATTTTAGCCCTATAATTCTTAAGAATGAAATGATTTTCAGGAACCCCGCGGAGAAGAAAACACCGAAACGCTCTCGGCCACGATCGGCGGTGAAAATCGAGCCAAATGACGGATCCGCGTCGAACAGAGATCATGATtgtattagcaatgctacgcctactgctactgctactgctgctgctactaacactactcctactgcagctactactaatgataactgtaacagtggttatgGAAATAACATACCGAGTATGATCGAGGAGACGGTGAGGAGTTGTTTGTCGCCGGTGTTGAAGGAGTTGATGGCAGGGGCCATGGGAGGAGGAGCGTTTGGAGCGAGAGGGTTTTCGTTGAACTTGAACCCTATGCCTTTGATGAATTGGAGTTTTGGCGGTGGGGAAATGGTGGATGAGAAATGGAGGAAACAACAGATATTGGAGTTGGAAGTGTACTCAAAGCGGTTGGAGCTGGTTCAGGATCAGATCAAGGCTGCTATGGAGGAGTTGCGGTCACACGGAGGAGATAATGACAATGGCTTCAGCTCTCAACCCCTTTCTCCCAACTCCACCCTACTCTCAAACCTAAACTCCATAACTTCCCCACTCTCTCCCTCTTCACCAACAAACCCCTCTCCAAACCTCCAAAACTCACCGTCAACTCCGTCGACGTCTCCAAAGAAGACACGCCCGCGTCCCTTACCGCCCGGCTACCAGTTCGAGAAGCTTCCGGATGATTGGCGCTGCCCCACGTGTGGGGCCGCCCAGAGTTTCTTCCAGAGCAAGAGCGTCCAGACTCCAGATCGCTGGGTTTGCGCAGAACCAGCAATATGGGCTTGGTGGCAATTCTCTCACTTCGGCCCAGAAGACTCTTTTTATATACGGCACTTGTTCTTCTTTTCCCTCTTTTTGGGTGGCTACTTCCTACAATAG 1617 0.5096 MASQQHDAVFREEDMDDDDDESQEDGDYEEEDDDVLADDEENEPSPSTALAVTVAVPGSSVSNGGAAPISTPTATTIVVADSSDPKRRRLEPVEEKKPPPTPDDSRRLFQRLWTDEDEIELLQGFLDYTSQRGSSHHNDTALFYDQIKSKLQLDFNKNQLVEKIRRLKKKYRNVLNKIGSGKEFSFKSAHDQATFEISRKIWSNVTPIGDNSLDDDEINPNRSPNPNLNFSPIILKNEMIFRNPAEKKTPKRSRPRSAVKIEPNDGSASNRDHDCISNATPTATATAAATNTTPTAATTNDNCNSGYGNNIPSMIEETVRSCLSPVLKELMAGAMGGGAFGARGFSLNLNPMPLMNWSFGGGEMVDEKWRKQQILELEVYSKRLELVQDQIKAAMEELRSHGGDNDNGFSSQPLSPNSTLLSNLNSITSPLSPSSPTNPSPNLQNSPSTPSTSPKKTRPRPLPPGYQFEKLPDDWRCPTCGAAQSFFQSKSVQTPDRWVCAEPAIWAWWQFSHFGPEDSFYIRHLFFFSLFLGGYFLQ 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g02286 538 MobiDBLite consensus disorder prediction 425 465 - -
Gma19g02286 538 PANTHER BNAANNG10740D PROTEIN-RELATED 1 402 IPR007592 GO:0006355
Gma19g02286 538 MobiDBLite consensus disorder prediction 1 106 - -
Gma19g02286 538 Gene3D - 453 494 - -
Gma19g02286 538 MobiDBLite consensus disorder prediction 12 41 - -
Gma19g02286 538 Pfam Protein of unknown function, DUF573 109 203 IPR007592 GO:0006355
Gma19g02286 538 MobiDBLite consensus disorder prediction 241 259 - -
Gma19g02286 538 MobiDBLite consensus disorder prediction 425 453 - -
Gma19g02286 538 MobiDBLite consensus disorder prediction 241 273 - -
Gma19g02286 538 Coils Coil 377 397 - -
Gma19g02286 538 SUPERFAMILY Rubredoxin-like 459 492 - -
Gma19g02286 538 MobiDBLite consensus disorder prediction 82 106 - -
Gma19g02286 538 Pfam Rubredoxin 462 487 IPR024935 GO:0005506
Gma19g02286 538 MobiDBLite consensus disorder prediction 46 80 - -
Gma19g02286 538 Coils Coil 157 177 - -
Gma19g02286 538 ProSiteProfiles Rubredoxin-like domain profile. 450 490 IPR024934 GO:0005506
Gma19g02286 538 PANTHER BNAANNG10740D PROTEIN 1 402 - -
Gma19g02286 538 ProSitePatterns Rubredoxin signature. 471 481 IPR018527 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g02286 Gma-Chr19 51597137 51600875 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g02286 45 400 GeBP Transcription Factor Family AT5G28040 46.316 1.66e-88 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GeBP Gma19g02286 DUF573 2.6e-34 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g02286 - - gmx:100779712 702.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g02286 19 51597137 51600875 Gma03g02251 03 47837212 47838971 GST
Gma19g02286 19 51597137 51600875 Gma10g01577 10 42856280 42858050 PCT
Gma19g02286 19 51597137 51600875 Gma20g02133 20 48574445 48575518 PCT
Gma10g01577 10 42856280 42858050 Gma19g02286 19 51597137 51600875 PCT
Gma20g02133 20 48574445 48575518 Gma19g02286 19 51597137 51600875 PCT