Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g02280 ATGGGGTGTGTGATTAGCAGGGAAGTGTCGAAGGGGGTAATCTCTGATGTGAAGGAGGAGAGGGATTTGAGTGGTGAGAGTAAGAGGAAGGTTGATGGAGTGTCAGGGAGCAAAGATGAGGTGGTAGAGGTTCAGAATGGTGAGAAGGAGAAGGAGAAAGGTGGTGAAGGGGTGCAGCGTGGCAAAAGGAGAAGATCGAAGGCGAATCCGAGGCTGAGCAATCCGCCAAAGCATTTGAGGTGGGAGCAGGTTGCAGCTGGGTGGCCACCGTGGCTCACTGCAGTGTGTGGGGAAGCACTCGGTGGCTGGATTCCGCGAAAGGCCGACACCTTTGAGAAAATTGATAAGattgggcaaggaacttatagtaatgtgtacaaagctaaagacatgatgacaggtaaaattgttgccctaaagaaggttcgatttgataattgggaacctgagagtgtaaaattcatggcgagagagattcttattttgcgaaggttggatcatcccaatgttgtaaagttgcaaggtttagttacgtcaaggatgtcctgtagtttgtatttggtgttcgattatatggagcatgatttggctggacttgctgcaagcccaggaatcaggttcacagagcctcaggtaaaatgttacatgcatcagctgctatcaggacttgagcactgtcataaccgtcgtgtacttcaccgtgatattaaaggatcaaatcttcttattgacaatgaaggaacacttaagattgctgactttggactggcttctattttcgatccaaacaataagcatcccatgactagtcgtgtagtaaccctttggtatcgacctcctgagttgcttcttggtgccacagattatggtgtgggtgtagacctctggagtgccggatgtattttaggagagttattggctgggaagccaatcATGCCTGGTCGTACAGAGgtggaacaattgcacaagatatacaaactatgtggttcaccttccgatgagtattggaagaagtcaaatttgcctaatgctaccttgtttaaaccactagagccatacaagagacgcataagagagacatttaaagattttccaccttctgctctacctctcatcgatacacttcttgcaattgatcctgtagaacggaaaactgcctcagatgctttaagaagtgagttctttaccacagaaccttatgcttgcgatccttcaagtcttccaaaatatcccccaagcaaggaaatggatgctaaacaaCGGGATGATGAAATGAGGAGACTAAGAGCTGCAGGCAAAGCTCAGGCTGATGGTCCAAAGAAGCATCATACACGTGATCGTGCTGCAAAAGCTTTTCCTGCTCCTGAAGCCAATGCTGAGCTTCAATCCAATATTGATAGAAGACGTCTAATCACTCATGCAAATGCCAAGAGCAAGAGCGAAAAGTTTCCTCCACCACATCAAGATGGACAAGTTGGTTTTCCTTTAGGATCTTCACATCACATTGATCCAGATACTGTTCCTACTGATGTCTCTTTTACTTCAACCTCCTATACTTATTCAAAGGAACCATTCCAAGCTTGGTCTGGTCCCATTGGAGTGCCAAAGCGGAAGAAACACACTGCAGGTATGGATGGAAACTTTTCACGAACCCTTCTCAGTTCTGAATCTTCGTTGCATCGCTGCTCTGAATCTTCGTCGCACATGACCATGGAGGCTGCTTCTGTGTCGAGAACGAAGGGGGATGTTTGGGGTGCAATGTTGAAATCTATGGAAGGGGGAGTTGTTGTGCGGTGTTTGAGGTGGTGGGCCTGGGTTAGGGAAGCTGAAGCGGCAAGTTTGAGGGAGTGGAATGGATTTGAGGAATGGGGTTTGGTTTTGTAA 1884 0.2596 MGCVISREVSKGVISDVKEERDLSGESKRKVDGVSGSKDEVVEVQNGEKEKEKGGEGVQRGKRRRSKANPRLSNPPKHLRWEQVAAGWPPWLTAVCGEALGGWIPRKADTFEKIDKIGQGTYSNVYKAKDMMTGKIVALKKVRFDNWEPESVKFMAREILILRRLDHPNVVKLQGLVTSRMSCSLYLVFDYMEHDLAGLAASPGIRFTEPQVKCYMHQLLSGLEHCHNRRVLHRDIKGSNLLIDNEGTLKIADFGLASIFDPNNKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILGELLAGKPIMPGRTEVEQLHKIYKLCGSPSDEYWKKSNLPNATLFKPLEPYKRRIRETFKDFPPSALPLIDTLLAIDPVERKTASDALRSEFFTTEPYACDPSSLPKYPPSKEMDAKQRDDEMRRLRAAGKAQADGPKKHHTRDRAAKAFPAPEANAELQSNIDRRRLITHANAKSKSEKFPPPHQDGQVGFPLGSSHHIDPDTVPTDVSFTSTSYTYSKEPFQAWSGPIGVPKRKKHTAGMDGNFSRTLLSSESSLHRCSESSSHMTMEAASVSRTKGDVWGAMLKSMEGGVVVRCLRWWAWVREAEAASLREWNGFEEWGLVL 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g02280 627 MobiDBLite consensus disorder prediction 414 450 - -
Gma19g02280 627 Pfam Protein kinase domain 111 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma19g02280 627 MobiDBLite consensus disorder prediction 403 500 - -
Gma19g02280 627 MobiDBLite consensus disorder prediction 15 63 - -
Gma19g02280 627 CDD STKc_CDK9_like 111 395 - -
Gma19g02280 627 MobiDBLite consensus disorder prediction 15 76 - -
Gma19g02280 627 Gene3D Phosphorylase Kinase; domain 1 99 193 - -
Gma19g02280 627 ProSitePatterns Serine/Threonine protein kinases active-site signature. 231 243 IPR008271 GO:0004672|GO:0006468
Gma19g02280 627 ProSitePatterns Protein kinases ATP-binding region signature. 117 140 IPR017441 GO:0005524
Gma19g02280 627 SMART serkin_6 111 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma19g02280 627 MobiDBLite consensus disorder prediction 462 484 - -
Gma19g02280 627 ProSiteProfiles Protein kinase domain profile. 111 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma19g02280 627 SUPERFAMILY Protein kinase-like (PK-like) 106 402 IPR011009 -
Gma19g02280 627 PANTHER CELL DIVISION PROTEIN KINASE 53 538 - -
Gma19g02280 627 PANTHER OS01G0367700 PROTEIN 53 538 - -
Gma19g02280 627 Gene3D Transferase(Phosphotransferase) domain 1 194 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g02280 Gma-Chr19 51462730 51468317 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g02280 103 445 Core Cell Cycle Gene Families AT5G10270 51.667 6.63e-122 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Gma19g02280 Pkinase 4.7e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g02280 K08819 - gmx:100790750 1081.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g02280 19 51462730 51468317 Gma03g02241 03 47693599 47698832 ECH
Gma19g02280 19 51462730 51468317 Gma19g02280 19 51462730 51468317 ECH
Gma19g02280 19 51462730 51468317 Gma03g02241 03 47693599 47698832 GST
Gma19g02280 19 51462730 51468317 Gma10g01564 10 42690410 42696963 PCT
Gma10g01564 10 42690410 42696963 Gma19g02280 19 51462730 51468317 PCT