Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g02244 ATGTGTTTGCCAGAGGGAGAAAGAGGCATGGCACTAGAAGCAGTAGTATATCCCCAACCTCAAGACCCGTTTGGCTACGGAATCAAAGACCCTTCTTACAACTACAACAACTTGTTAGAAGGTGGTGGAGGCAACTGGGGCTTTGAAAAAGAAGAGCAAGGTTTTGTCACTTTTCTGGAGAACCAAACAGAGAATTATCCTTATGGAGAATGGAACTGTTCTCCTTCTCCACCATCCATGTTGCCTCACTTGAATGCATCAAATCCTCAGTCTTCAGAAACCAGCAACATACATAACAACTTAGATAGTTCAATTTCCACCCCTGCTCGTCCCAAAAGGCGCAGAACCAAAAGCAGGAAGAATAAGGAAGAGATTGAGAACCAGAGAATGACTCACATTGCTGTAGAGCGCAACAGAAGGAAGCAAATGAACGAGTATCTCTCTGTTCTTCGCTCTCTAATGCCTGAATCTTACGTCCAAAGGGGTGATCAAGCATCTATAATTGGGGGTGCTATCAACTTTGTTAAGGAGCTGGAGCAGAGGCTGCAATTTCTTGGTGGTCAGAAAGAGAAAGAGGAGAAATCTGATGTGCCCTTTTCTGAGTTCTTCTCCTTTCCACAGTACTCAACAAGTGCCGGTGGGGGCTGCGACAATTCTACAGCCATGAGTGAGCAAAAGTGTGAGGCTCAGTCTGGCATTGCTGACATAGAAGTGACAATGGTAGAGAGCCATGCAAATCTCAAAATAAGATCCAAGAAACGGCCAAAGCAGCTCTTGAAAATAGTCTCTAGTTTGCATGGCATGCGTCTCACAATCTTGCACCTAAATGTTACCACCACAGGGGAAATTGTCCTCTATTCTCTTAGTGTTAAGGTGGAAGAAGATTGCAAGCTGGGATCAGTGGATGAGATAGCTGCAGCAGTGTACCAAATGCTGGATAGGATTCAACAAGAGTCAATCTTGAATTAA 969 0.4448 MCLPEGERGMALEAVVYPQPQDPFGYGIKDPSYNYNNLLEGGGGNWGFEKEEQGFVTFLENQTENYPYGEWNCSPSPPSMLPHLNASNPQSSETSNIHNNLDSSISTPARPKRRRTKSRKNKEEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPESYVQRGDQASIIGGAINFVKELEQRLQFLGGQKEKEEKSDVPFSEFFSFPQYSTSAGGGCDNSTAMSEQKCEAQSGIADIEVTMVESHANLKIRSKKRPKQLLKIVSSLHGMRLTILHLNVTTTGEIVLYSLSVKVEEDCKLGSVDEIAAAVYQMLDRIQQESILN 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g02244 322 Pfam Helix-loop-helix DNA-binding domain 128 179 IPR011598 GO:0046983
Gma19g02244 322 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 10 322 - -
Gma19g02244 322 SMART finulus 133 184 IPR011598 GO:0046983
Gma19g02244 322 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 127 178 IPR011598 GO:0046983
Gma19g02244 322 MobiDBLite consensus disorder prediction 77 107 - -
Gma19g02244 322 CDD bHLH_AtFAMA_like 130 201 - -
Gma19g02244 322 MobiDBLite consensus disorder prediction 77 125 - -
Gma19g02244 322 Gene3D - 111 195 IPR036638 GO:0046983
Gma19g02244 322 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 127 191 IPR036638 GO:0046983
Gma19g02244 322 Coils Coil 175 195 - -
Gma19g02244 322 PANTHER MAX DIMERIZATION, MAD 10 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g02244 Gma-Chr19 51161057 51162598 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g02244 10 292 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 48.089 2.16e-73 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma19g02244 HLH 7.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g02244 - - gmx:100782243 630.943
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g02244 19 51161057 51162598 Gma19g02244 19 51161057 51162598 ECH
Gma19g02244 19 51161057 51162598 Gma03g02207 03 47445947 47448104 GST
Gma19g02244 19 51161057 51162598 Gma10g01541 10 42504564 42506348 PCT
Gma19g02244 19 51161057 51162598 Gma20g02168 20 48839908 48841673 PCT
Gma10g01541 10 42504564 42506348 Gma19g02244 19 51161057 51162598 PCT
Gma20g02168 20 48839908 48841673 Gma19g02244 19 51161057 51162598 PCT