Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g02243 ATGAAGAAGCACATTCACATAGCCCTATTCCTCCTTCTGGTGTCACCGTTAATCCCCATCGCCGTCGCGCAGGCCCAATCCCAGCCCAATGACTTCTCCGACGCAAACCTCAACCAGTTCAGCCCCTCCATAGCCATAATCATAGTCATACTTGTCGCCGCGCTTTTCCTCATGGCTTTTTTCTCCATCTACGTACGCCACTGCGCCGATTCCCCTTCCACCACCGTTAGCCCTCTCACTACCGCACGCTCCCGGAGGGCCGCGCGTGGGCTTGACCCAGCTGTGATCCAAACATTCCCAATCCTCGAATACTCCGAGGTTAAGATCCACAAAATCGGAAAAGAAGCGTTGGAATGCGCGGTGTGTTTGTGCGAGTTCGAGGACACCGAAACGCTGCGTTTGATCCCCAAGTGCGATCACGTTTTCCACCCCGAGTGCATCGACGAGTGGTTGGGCTCCCACACCACGTGTCCCGTGTGCCGCGCCAACCTCGTTCCCACCGACTCCGAGGATGCTATTGCTAACGGTAACGCTAACGGCGTTGTTCCAGTTCCGGAGACGTTTACGCGAGACATTGAAGCCCAAAACGACGCCGTGGAAGCGGCGCCAGAGCAGCAGAACGCGGAGGCTGACCCAGTCTTACCTGAACCGGAAGTAGTTTCCCTGGACAAAACACTGAACCGGAACCGCACGCGAGGGTCTCGGTCGAACCGGCCTCGGAGGTTTCCAAGGTCGCACTCGACCGGGCACTCGCTGGTCCAACCGGGAGAAAACACTGACCGGTTCACTTTGAGGTTGCCTTTGGAGGTGAGGAAGCAATTAATAAACCGCCAATTGCAACGTGCGAGTAGCTTGATCGTGTTACCCAGGGAAGGTAGTTTGCGGCAGGGTTACCGAACCGGAGGAGAAGGGAGTAGTAGGGGGAAGATTTCGAGGCGGTTGGACCGGAGTTTGAAATCGGACCGGTGGATTTTCTCGATGGCTGCGCCCTTTTTTGCAAGGGCGTTGTCTATTAGATCGCCTAGGGTTCGAAACAATGATGTTGAAGGAACGGCGTCGTCGTCGTCGTCTTCCACCGCGCCTATCTTGCCGCCGACGGCCGTTGACTCGGCGAGGCCTCTGGTCTAA 1128 0.5656 MKKHIHIALFLLLVSPLIPIAVAQAQSQPNDFSDANLNQFSPSIAIIIVILVAALFLMAFFSIYVRHCADSPSTTVSPLTTARSRRAARGLDPAVIQTFPILEYSEVKIHKIGKEALECAVCLCEFEDTETLRLIPKCDHVFHPECIDEWLGSHTTCPVCRANLVPTDSEDAIANGNANGVVPVPETFTRDIEAQNDAVEAAPEQQNAEADPVLPEPEVVSLDKTLNRNRTRGSRSNRPRRFPRSHSTGHSLVQPGENTDRFTLRLPLEVRKQLINRQLQRASSLIVLPREGSLRQGYRTGGEGSSRGKISRRLDRSLKSDRWIFSMAAPFFARALSIRSPRVRNNDVEGTASSSSSSTAPILPPTAVDSARPLV 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g02243 375 MobiDBLite consensus disorder prediction 199 258 - -
Gma19g02243 375 SMART ring_2 119 160 IPR001841 -
Gma19g02243 375 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 167 IPR013083 -
Gma19g02243 375 PANTHER RING FINGER DOMAIN-CONTAINING 1 313 - -
Gma19g02243 375 ProSiteProfiles Zinc finger RING-type profile. 119 161 IPR001841 -
Gma19g02243 375 SUPERFAMILY RING/U-box 118 167 - -
Gma19g02243 375 MobiDBLite consensus disorder prediction 345 375 - -
Gma19g02243 375 CDD RING-H2_EL5_like 118 161 - -
Gma19g02243 375 MobiDBLite consensus disorder prediction 345 364 - -
Gma19g02243 375 Pfam Ring finger domain 118 161 IPR001841 -
Gma19g02243 375 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 313 - -
Gma19g02243 375 MobiDBLite consensus disorder prediction 231 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g02243 Gma-Chr19 51139750 51141461 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g02243 1 360 Rapid Response to Elicitors AT3G05200 41.707 5.90e-86 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g02243 K10664 - gmx:100781706 689.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g02243 19 51139750 51141461 Gma19g02243 19 51139750 51141461 ECH
Gma19g02243 19 51139750 51141461 Gma03g02206 03 47423239 47424938 GST
Gma19g02243 19 51139750 51141461 Gma10g01540 10 42473098 42474507 PCT
Gma19g02243 19 51139750 51141461 Gma20g02169 20 48863446 48864441 PCT
Gma10g01540 10 42473098 42474507 Gma19g02243 19 51139750 51141461 PCT
Gma20g02169 20 48863446 48864441 Gma19g02243 19 51139750 51141461 PCT