Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g02238 ATGTTAGTCAGAATCGATCACACAGCTTTTGTTCTCGCACTTCGCTGTCTGAGGTTCTGGATTCTCAGTGTTTGCGAAGCGCTGCATCATCCTTTGGGGAAGCCAGGCCAAATAACTGGGCCACCGGGGTCTGTTGTGACATCAGTTGGTACCATTCAATCCACACCTGCTGGAGCTCAGCTAGGACAGCATCAACTTGCTTATCAGCATATTCATCAGCAACAACaacaccagcttcagcaacagctccaacaattttggtcaaaccagtaccaagaaattgagaaggttactgatttcaagaaccacagtcttcccctggcaaGGATCAAGAAGATTATGAAGGCTGACGAGGATGTTAGGATGATATCAGCCGAAGCACCAGTCATCTTTGCAAGGGCATGTGAAATGTTCATATTAGAGTTAACCCTGCGTTCTTGGAATCACACTGAAGAGAACAAAAGGCGAACACTTCAAAAAAATGATATTGCTGCTGCAATCACAAGGACTGACATCTTTGATTTCTTGGTTGACATTGTGCCTCGTGAGGACTTGAAAGATGAAGTGCTTGCATCAATCCCAAGAGGAACAATGCCTGTTGCAGGGCCTGCTGATGCCCTTCCATATTGCTACATGCCGCCTCAGCATGCGTCCCAAGTTGGAGCTGCTGGTGTTATAATGGCCACCAGACCAACGACAGTCGTCCCCAGAACATTAGCTGATGTGTCGTGGAAATTAAGATAA 744 0.4059 MLVRIDHTAFVLALRCLRFWILSVCEALHHPLGKPGQITGPPGSVVTSVGTIQSTPAGAQLGQHQLAYQHIHQQQQHQLQQQLQQFWSNQYQEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLASIPRGTMPVAGPADALPYCYMPPQHASQVGAAGVIMATRPTTVVPRTLADVSWKLR 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g02238 247 SUPERFAMILY Histone-fold 76 176 IPR009072 GO:0046982
Gma19g02238 247 Pfam Core histone H2A/H2B/H3/H4 72 167 IPR007125 GO:0003677
Gma19g02238 247 Gene3D Histone, subunit A 66 182 IPR009072 GO:0046982
Gma19g02238 247 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 37 229 - -
Gma19g02238 247 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 37 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g02238 Gma-Chr19 51100240 51102830 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g02238 65 229 CCAAT-HAP5 Transcription Factor Family AT1G08970 76.506 3.35e-81 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Gma19g02238 CBFD_NFYB_HMF 5.3e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g02238 K08066 - gmx:100527803 343.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g02238 19 51100240 51102830 Gma03g02201 03 47391684 47392511 ECH
Gma19g02238 19 51100240 51102830 Gma19g02238 19 51100240 51102830 ECH
Gma19g02238 19 51100240 51102830 Gma03g02201 03 47391684 47392511 GST
Gma19g02238 19 51100240 51102830 Gma10g01534 10 42425705 42426499 PCT
Gma19g02238 19 51100240 51102830 Gma20g02174 20 48900555 48901226 PCT
Gma10g01534 10 42425705 42426499 Gma19g02238 19 51100240 51102830 PCT
Gma20g02174 20 48900555 48901226 Gma19g02238 19 51100240 51102830 PCT