Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g02220 ATGTCAAACTCAAACATCACAAGTTGTGATAGTTGGAGCTTCACTACAGAGAATAATAATAATGGAGAAGATGCAGCAGCAACTGTTAAACAGCAATTGGAGATGCTTGGCCAGCTTTATAGTCCAAATTCAAACACTTCAACCACAACAAATAATAGCAATGGTGGCTCAAACGCAGATTCACAACCACCTGCTAAGAAGAAAAGAAACCTACCAGGAAATCCAGATCCAAGTGCTGAAGTCATAGCACTCTCACCAAACACCCTGGTGGCCACAAACAGGTTCATATGTGAAATATGCAACAAAGGGTTTCAAAGGGACCAAAACCTTCAATTGCACCGTCGAGGCCATAACCTACCGTGGAAGCTGAAACTGAGAACCACCACTGAAGTTCGAAAACGGGTTTATGTTTGTCCTGAACCCTCATGTGTGCATCACAACCCAGCTCGTGCACTAGGTGATCTCACTGGCATTAAAAAGCACTTTAGCAGAAAGCACGGCGACAAGAAGTGGAAATGTGAGAAGTGCTCCAAGAAATATGCTGTTCAGTCTGATTGGAAAGCCCATTCCAAAATATGCGGAACAAAGGAATACAAATGTGACTGTGGCACCATCTTTTCCAGAAGAGACAGTTTCGTCACCCACAGAGCTTTCTGCGATGCACTGAGTGAGGAGAACAACAAGTGCAACGAAGTGCCAAAGATGCATGGTTCAAACTTGCAACCACCAATAATTCCAAACATAGTTGCATCATTACCAATAATCAATGCCAACAATCACAAGAACCCATTTTCACTCCCACACGACCTCATGACAACAATTCCCGCAAAACCCTTCAACAACATGGCTGCAGCATTCACGAGAAGCCTTTCATCCACCTCTTCACCCTCTCAACTAAGCTCAAATTCACCAAACATTAATATGTTGGTGGAAAATGGTCTCCTTTCACCTCACATGTCCGCCACGGCATTGCTCCAAAAAGCAGCACAAATGGGTGCAACAGTGAATAGTAACAACAACAGCATGATGAGTAGTGATGAAAAAAGCTTTATTGTCACAAGCATGGCACCACCATCATATGGGATCATGAACCACAACATGCACAATGGTCAACAAGACTTGTCACAATATAATTTCAATGCGAATGGGATGGTGGATGGTGGTAGCAATAATGGCATGGGAATGGGTGGTTTGGATATGTTTAATGCTATATTGGATCAAAGTAAGGCCTTGTCGAAGATCATAGAGCAGAACAACAGAAACAGTACTTATAATGGTGTTTTGCATGCAATGAATAATGGTAAGTCAAGTGACCCCATTGAAGGTGGTGGAACTAAAGGGAGTGAAGCTGTGAATCATGTGATGACTTTGGACTTGTTGGGGATAGGAGGTGGTGGTGGAGATGGTAATTTCTATGGTGGTGATCAACAGTCAGAAATAGCTGCTGGAGATGGAATATGGAGAAATTGGTCAAATAAGAATGCAGGGCTTGAATCATTTTCAGCAACAAACAGCACTATGTGA 1524 0.4278 MSNSNITSCDSWSFTTENNNNGEDAAATVKQQLEMLGQLYSPNSNTSTTTNNSNGGSNADSQPPAKKKRNLPGNPDPSAEVIALSPNTLVATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKLRTTTEVRKRVYVCPEPSCVHHNPARALGDLTGIKKHFSRKHGDKKWKCEKCSKKYAVQSDWKAHSKICGTKEYKCDCGTIFSRRDSFVTHRAFCDALSEENNKCNEVPKMHGSNLQPPIIPNIVASLPIINANNHKNPFSLPHDLMTTIPAKPFNNMAAAFTRSLSSTSSPSQLSSNSPNINMLVENGLLSPHMSATALLQKAAQMGATVNSNNNSMMSSDEKSFIVTSMAPPSYGIMNHNMHNGQQDLSQYNFNANGMVDGGSNNGMGMGGLDMFNAILDQSKALSKIIEQNNRNSTYNGVLHAMNNGKSSDPIEGGGTKGSEAVNHVMTLDLLGIGGGGGDGNFYGGDQQSEIAAGDGIWRNWSNKNAGLESFSATNSTM 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g02220 507 MobiDBLite consensus disorder prediction 36 78 - -
Gma19g02220 507 Gene3D Classic Zinc Finger 150 230 - -
Gma19g02220 507 ProSitePatterns Zinc finger C2H2 type domain signature. 97 117 IPR013087 -
Gma19g02220 507 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 40 466 - -
Gma19g02220 507 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 40 466 - -
Gma19g02220 507 Pfam Zinc-finger double-stranded RNA-binding 95 117 IPR022755 -
Gma19g02220 507 MobiDBLite consensus disorder prediction 36 64 - -
Gma19g02220 507 SUPERFAMILY beta-beta-alpha zinc fingers 94 191 IPR036236 -
Gma19g02220 507 SMART c2h2final6 136 166 IPR013087 -
Gma19g02220 507 SMART c2h2final6 171 191 IPR013087 -
Gma19g02220 507 SMART c2h2final6 95 117 IPR013087 -
Gma19g02220 507 MobiDBLite consensus disorder prediction 1 23 - -
Gma19g02220 507 ProSiteProfiles Zinc finger C2H2 type domain profile. 95 117 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g02220 Gma-Chr19 50978597 50982834 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g02220 45 228 IDZ Gene Family AT5G66730 78.191 1.12e-108 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma19g02220 zf-C2H2_jaz 7.4e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g02220 - - gmx:100806469 952.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g02220 19 50978597 50982834 Gma03g02176 03 47211628 47214596 ECH
Gma19g02220 19 50978597 50982834 Gma19g02220 19 50978597 50982834 ECH
Gma19g02220 19 50978597 50982834 Gma03g02176 03 47211628 47214596 GST
Gma19g02220 19 50978597 50982834 Gma10g01507 10 42174695 42178237 PCT
Gma19g02220 19 50978597 50982834 Gma20g02198 20 49099534 49103482 PCT