Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g02196 ATGGCTATTTCCGAGCTATCCTTGAGCTTATTCATGGTCTATGTTCTAAGCATTTTCTCCAACTTTGCGTCTCTTGCATCATCCTCTTCCTCCACCGATACCATATGCAACCTTACACCTTATCCAACATTTTGTGAATCCAATTCACCTTCTAGTAACAGCCAAGGCGACATACACGAATATGGCCGGTTTTTTGCAGGCAAATCCTTGTCATCGTCGAAGAAGTTCGTCGCATTAGTCTCTAAATACCTTTATAAATCTCCATCCAATTTCTCAAACTCCACAATTCTTGCTCTTCAAGATTGTCACCTTCTAGGTGACCTGAATAAGGACTTTTGGCATAAGACCCAACAAAGCATAAATTCCACAAACACCCTCAGTAGCTCAGAAGGTGAAAAATTGCACAATTTGCTTAGTGCTACATTGACCAACCACGACACGTGCTTAAACAGCCTTCATGAAACTACTTCAAGCCCTGACAATGACCTACTAACCCATCTTTCAAATGGAACCAAGTTTTATAGCATATCTCTTGCAATCTTCAAGCGGGGATGGGTGAACAATACTGCAAATAAGGAGAGAAAACTTGCAGAAAGAAATTATCACATGTGGGAACAGAAGCTGTACGAGATTATCAGAATAAGAGGAAGAAAATTGTTTCAGTTGGCTCCAGACAACGTTGTTGTGAGCCAAAGGGTGGTGGTGAACCCAGATGGTTCTGGAAACTTCACAACTATCAATGATGCAGTGGTTGCAGCTCCAAATAACACCGGGGTTGGAAATGGGTTTTTCGTGATTCACGTGGTGGCTGGAGTGTATGAAGAATATGTTTCTATTCCCAAAAACAAGCAGTACCTGATGATGATAGGAGATGGAATTAACCAAACCATAATCACCGGTAATCGCAGCGTGGTTGATGGTTGGACTACCTTCAATTCTGCAACATTTGCCGTGGTTGCACAAGGTtttgtggcaataaacataacatttcgcaacacagctggagcaatcaagcaccaagcaggaaggactgacattaaccaAAACACCGGCACCTCCATACACAATTGTAGCATAACCGCCGCGAGTGACTTGGCCACTAGCAATGGCACCACGAAAACGTACCTAGGAAGACCCTGGAAGCAATATTCAAGAACACTTTATATGCAGTCTTTCATGGACGACGGTTTGATCGATCCAGAGGGGTGGAAAGCTTGGTCTGGGGACTTTGCTTTGGACACACTTTATTATGCGGAATTTGATAATCAAGGGCCTGGATCTAACACTAGTAATAGGGTTACTTGGCCAGGGTACCATGTGATTAATGCCACAGATGCTGTCAATTTCACAGTTGCTAATTTCATAATAGGTGATGCTTGGCTGCCTGCGACTGGAGTACCTTACTATGCTGATTTACTCATCTGA 1425 0.407 MAISELSLSLFMVYVLSIFSNFASLASSSSSTDTICNLTPYPTFCESNSPSSNSQGDIHEYGRFFAGKSLSSSKKFVALVSKYLYKSPSNFSNSTILALQDCHLLGDLNKDFWHKTQQSINSTNTLSSSEGEKLHNLLSATLTNHDTCLNSLHETTSSPDNDLLTHLSNGTKFYSISLAIFKRGWVNNTANKERKLAERNYHMWEQKLYEIIRIRGRKLFQLAPDNVVVSQRVVVNPDGSGNFTTINDAVVAAPNNTGVGNGFFVIHVVAGVYEEYVSIPKNKQYLMMIGDGINQTIITGNRSVVDGWTTFNSATFAVVAQGFVAINITFRNTAGAIKHQAGRTDINQNTGTSIHNCSITAASDLATSNGTTKTYLGRPWKQYSRTLYMQSFMDDGLIDPEGWKAWSGDFALDTLYYAEFDNQGPGSNTSNRVTWPGYHVINATDAVNFTVANFIIGDAWLPATGVPYYADLLI 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g02196 474 Pfam Pectinesterase 233 341 IPR000070 GO:0030599|GO:0042545
Gma19g02196 474 Pfam Pectinesterase 342 458 IPR000070 GO:0030599|GO:0042545
Gma19g02196 474 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 33 183 IPR035513 -
Gma19g02196 474 PANTHER PECTINESTERASE 342 471 - -
Gma19g02196 474 TIGRFAM PME_inhib: pectinesterase inhibitor domain 6 182 IPR006501 GO:0004857
Gma19g02196 474 Coils Coil 187 207 - -
Gma19g02196 474 Pfam Plant invertase/pectin methylesterase inhibitor 33 180 IPR006501 GO:0004857
Gma19g02196 474 PANTHER PECTINESTERASE 342 471 - -
Gma19g02196 474 SMART PMEI_2 27 180 IPR006501 GO:0004857
Gma19g02196 474 Gene3D Invertase/pectin methylesterase inhibitor family protein 26 183 IPR035513 -
Gma19g02196 474 PANTHER PECTINESTERASE 13 341 - -
Gma19g02196 474 PANTHER PECTINESTERASE 13 341 - -
Gma19g02196 474 SUPERFAMILY Pectin lyase-like 229 470 IPR011050 -
Gma19g02196 474 Gene3D - 226 341 IPR012334 -
Gma19g02196 474 Gene3D - 342 472 IPR012334 -
Gma19g02196 474 CDD PMEI-like_3 34 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g02196 Gma-Chr19 50761104 50763663 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g02196 330 473 Carbohydrate Esterase AT4G02330 62.500 3.37e-58 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g02196 K01051 - gmx:100801141 649.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g02196 19 50761104 50763663 Gma10g01487 10 41981302 41989057 PCT