Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g02180 ATGATGGATCTGAAGGAATGGTCATCATCTTCTGAGGAATTGAATGTGAACAGGAAATGTTGCGCTGATTGCAAAACCACCAAGACCCCACTCTGGAGAGGAGGACCAGCTGGACCCAAGACTCTATGCAACGCTTGTGGAATTAGGTATCGGAAGAGAAGGGCATGTTGGAGGAAGGGAGAGTTGAagaaacagaaacagaaacagaaacagaGGTGGAAGATGCTGGGGGAAGAGGAACAAGCGGCGGTGTGTTTGATGGCCCTGTCCTGTGGTTTTGTTTTCGCTTGA 291 0.4536 MMDLKEWSSSSEELNVNRKCCADCKTTKTPLWRGGPAGPKTLCNACGIRYRKRRACWRKGELKKQKQKQKQRWKMLGEEEQAAVCLMALSCGFVFA 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g02180 96 ProSiteProfiles GATA-type zinc finger domain profile. 21 51 IPR000679 GO:0006355|GO:0043565
Gma19g02180 96 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 19 70 - -
Gma19g02180 96 Gene3D - 16 80 IPR013088 GO:0006355|GO:0008270
Gma19g02180 96 SMART GATA_3 15 69 IPR000679 GO:0006355|GO:0043565
Gma19g02180 96 ProSitePatterns GATA-type zinc finger domain. 21 46 IPR000679 GO:0006355|GO:0043565
Gma19g02180 96 Pfam GATA zinc finger 21 54 IPR000679 GO:0006355|GO:0043565
Gma19g02180 96 PANTHER OS01G0976800 PROTEIN 62 96 - -
Gma19g02180 96 PANTHER OS01G0976800 PROTEIN 7 68 - -
Gma19g02180 96 CDD ZnF_GATA 21 54 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g02180 Gma-Chr19 50635906 50636654 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g02180 3 96 C2C2-Gata Transcription Factor Family AT5G49300 48.760 7.39e-27 94.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gma19g02180 GATA 2.5e-18 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g02180 - - gmx:100806819 196.052
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g02180 19 50635906 50636654 Gma03g02148 03 46936160 46936937 ECH
Gma17g00285 17 2309032 2309631 Gma19g02180 19 50635906 50636654 ECH
Gma07g02346 07 46167547 46168506 Gma19g02180 19 50635906 50636654 ECH
Gma19g02180 19 50635906 50636654 Gma19g02180 19 50635906 50636654 ECH
Gma19g02180 19 50635906 50636654 Gma03g02148 03 46936160 46936937 GST