Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g02172 ATGTCTAACACCAGCAACAATGTCGCTGGGGTCGACAACACGTTCAGAAGAAAATTTGATCGAGAAGAGTATCTAGAACGAGCACGGGAGCGCGAGAGACAGGAGGAGGAGGGTCGAGCGAAACCTAAAGCCAAAGGTCCTCCCGTGCAGAGGAAGCCCTTGAAACATAGAGATTATGAAGTGGACCTTGAATCCCGCTTGGGCAAGACTCAGGTTGTTACGCCGGTTGCACCACTAAGTCAGCAGGCTGGATACTACTGCTCAGTTTGTGAGTGTGTGGTGAAGGACTCTGCAAACTACTTGGATCATATTAATGGAAAGAAACATCAAAGAGCCTTGGGCATGTCCATGCGAGTAGAACGTGCTTCTCTCCAACAGGTTCAGGAACGATTTGAAGTTCTTAAGAAGCGTAAAGATGTTGGCAGCTTCACAGAGCAAGATCTTGACGAGCGGATTTTAAAACAGCAGCAAGAGGAGGAAGAAAGAAAGCGACTGCGTCGAGAAAAGAAAAAAGAAAAGAAGGAGAAGGCAGTTGAAGAACCTGAAATTGATCCTGATGTTGCtgccatgatggggtttggaggtttccggtcatccaacaagaaatga 609 0.4351 MSNTSNNVAGVDNTFRRKFDREEYLERARERERQEEEGRAKPKAKGPPVQRKPLKHRDYEVDLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLQQVQERFEVLKKRKDVGSFTEQDLDERILKQQQEEEERKRLRREKKKEKKEKAVEEPEIDPDVAAMMGFGGFRSSNKK 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g02172 202 MobiDBLite consensus disorder prediction 157 202 - -
Gma19g02172 202 Pfam Zinc-finger of C2H2 type 85 109 - -
Gma19g02172 202 SMART ZnF_U1_5 82 116 IPR003604 GO:0003676|GO:0008270
Gma19g02172 202 Coils Coil 148 180 - -
Gma19g02172 202 PANTHER ZINC FINGER MATRIN-TYPE PROTEIN 2 3 201 IPR040107 GO:0000398|GO:0005681
Gma19g02172 202 MobiDBLite consensus disorder prediction 20 44 - -
Gma19g02172 202 Gene3D Classic Zinc Finger 79 117 - -
Gma19g02172 202 SUPERFAMILY beta-beta-alpha zinc fingers 80 122 IPR036236 -
Gma19g02172 202 MobiDBLite consensus disorder prediction 20 55 - -
Gma19g02172 202 MobiDBLite consensus disorder prediction 157 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g02172 Gma-Chr19 50569484 50572809 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g02172 4 147 C2H2 Transcription Factor Family AT3G05760 80.556 2.05e-84 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma19g02172 zf-C2H2_jaz 1.8e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g02172 K12848 - gmx:100527057 329.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g02172 19 50569484 50572809 Gma19g02172 19 50569484 50572809 ECH
Gma19g02172 19 50569484 50572809 Gma03g02139 03 46870376 46874862 GST