Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g02166 ATGGAAGCAGTTTACAGGTTGAAACCTCTTTTGGATGTGGTTAGAGTTGGGAACGCTACCACTTCTGAGATGCGTCTTGAATCAACGGCTAATTGTTACCTGCAGCTAGAAGCTCCTCAACCTCAAGAGAATAATAATGTAACCGACTCATCATCAGATATGTCGGATCGGATAATCAAGATCCAGATCGCCAATCACCCTCTTTATCCAGATTTACTCTCTGCATATATTGAATGCCAAAAGGTTGGAGCACCGCCAGAACTGGCATGCCTTCTTGAAGAAATAGGCCGAGAAAGCCACCGCATGAATGCTCGCCGTGAGATAGGGGAGGGCCCTGAACTTGACCACTTCATGGAAACATTCTGCCAAGTTCTTCATAGATACAAGGAGGAGTTGTCCAGGCCCTTCAACGAAGCGACTTTGTTTTTGGGTGACATGGAATCACAACTCAGCAACCTTTGTAATGAAACACTAACAAAGTCATCGGATAACAACAACCGCTCCGACGAGGTAGCTAGTGGGGCATCAGAAGAGGAATTAAGTTGTGGGGAGATGGAAGCATTTGAAGATAATGTATCTTCAGTAACTTGTCCAAGTGATCAAAGGCTTAAAGAGATGCTCCTTCGCAAATACAGTGGCCATTTTAGCGGTTTGAGAAAGGAATTTCTGAAACGAAGAAAAAAGGGTAAGCTACCAAAGGATGCAAGGATGGCACTCATGGGCTGGTGGAACACCCATCATAGATGGCCTTATCCTACGGAGGAGGAGAAAGTGAAGTTATCAGAAATTACTGGTCTGGATCAAAAGCAGATCAATAATTGGTTCATCAATCAGAGAAAACGGCATTGGAAACCTACCGAGGACATGCGATTTGCCGTCATGGACGGATTAAGAGGCGGCGGTGGCGGCGGCATAGGAGGGCCTATGTTGTTTTAG 936 0.4551 MEAVYRLKPLLDVVRVGNATTSEMRLESTANCYLQLEAPQPQENNNVTDSSSDMSDRIIKIQIANHPLYPDLLSAYIECQKVGAPPELACLLEEIGRESHRMNARREIGEGPELDHFMETFCQVLHRYKEELSRPFNEATLFLGDMESQLSNLCNETLTKSSDNNNRSDEVASGASEEELSCGEMEAFEDNVSSVTCPSDQRLKEMLLRKYSGHFSGLRKEFLKRRKKGKLPKDARMALMGWWNTHHRWPYPTEEEKVKLSEITGLDQKQINNWFINQRKRHWKPTEDMRFAVMDGLRGGGGGGIGGPMLF 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g02166 311 Pfam ELK domain 202 223 IPR005539 GO:0003677
Gma19g02166 311 MobiDBLite consensus disorder prediction 157 176 - -
Gma19g02166 311 MobiDBLite consensus disorder prediction 157 171 - -
Gma19g02166 311 Pfam KNOX1 domain 59 100 IPR005540 GO:0003677|GO:0005634
Gma19g02166 311 ProSiteProfiles 'Homeobox' domain profile. 222 285 IPR001356 GO:0003677
Gma19g02166 311 ProSitePatterns 'Homeobox' domain signature. 260 283 IPR017970 GO:0000981|GO:0006355
Gma19g02166 311 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 10 18 296 - -
Gma19g02166 311 SMART ELK_2 202 223 IPR005539 GO:0003677
Gma19g02166 311 SMART KNOX2_2 104 155 IPR005541 GO:0003677|GO:0005634
Gma19g02166 311 Pfam Homeobox KN domain 242 281 IPR008422 GO:0003677|GO:0006355
Gma19g02166 311 SMART KNOX1_2 57 101 IPR005540 GO:0003677|GO:0005634
Gma19g02166 311 CDD homeodomain 225 285 IPR001356 GO:0003677
Gma19g02166 311 SMART HOX_1 224 289 IPR001356 GO:0003677
Gma19g02166 311 Pfam KNOX2 domain 108 154 IPR005541 GO:0003677|GO:0005634
Gma19g02166 311 ProSiteProfiles ELK domain profile. 202 222 IPR005539 GO:0003677
Gma19g02166 311 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 18 296 - -
Gma19g02166 311 SUPERFAMILY Homeodomain-like 224 294 IPR009057 -
Gma19g02166 311 Gene3D - 220 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g02166 Gma-Chr19 50531283 50537101 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g02166 38 300 Homeobox Transcription Factor Family AT1G23380 52.045 1.52e-82 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Gma19g02166 KNOX2 7.1e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g02166 - - gmx:100803095 606.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g02166 19 50531283 50537101 Gma19g02166 19 50531283 50537101 ECH
Gma19g02166 19 50531283 50537101 Gma03g02130 03 46804368 46826019 GST
Gma19g02166 19 50531283 50537101 Gma10g01452 10 41636580 41641713 PCT
Gma19g02166 19 50531283 50537101 Gma20g00946 20 36115073 36119889 PCT
Gma10g01452 10 41636580 41641713 Gma19g02166 19 50531283 50537101 PCT
Gma20g00946 20 36115073 36119889 Gma19g02166 19 50531283 50537101 PCT