LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma19g02155	ATGTCTGAGCGAACTGGTTCTGGTTCTGGTTCTGACAGGACGAAGAGAAGCAATACGAGTGGAGTTGAGCCACACGAGAGTCGGAGAAGGAAAGAAGAGAACCTGATCGGCGTCAGAAGACAAAAACGTGCCCGTTTACGCTATCCGGCTTTGACAGCTATTCCCAAGTTGCTACAATCTCTATGTTCTGAGTACCCTGCCTTAGAATCGCAGATAACTTCTCACTTAAATACTCTGTTAGCACTTGATGATCAAATCCCTCTGATTGATGATGTCCTTAAGGATGTTGTTCTCCCTCGCTTTGTCAAGTTCTTGGATGACGAGAAAGAACCCCAATTTCAGTTAGAAGCTCTATGGGTTCTAACCAATTTTGCGGAAGCATCATCCAAACACACAAAAGTTGTCCTTGAAGTTGGTGTCATTCCCCGCATTGTGAGCATTCTCAAGTATAACAGCGAAGTAGAAATCCTAGAACAGGCGATATACGCTTTAGGGCTCATTGCCGATTATTCCCCGAGCTATAGGGATCGTGCTCTTAGCAATGGTTCTCTTCGACCACTATTATCTCTGGTGGAATCACTTCCAGGATCGTCTATGTTGATTGCAAGGACACTTTGTAGTTTGGTCCAAGGAAAGCCTCCGGTGAATTTTCAACGGGTAAAGAATGCCTTGCCTGTCCTTCAGAAACTCATCCACACGGCCAATGAAGAAGTTGTATCAGATGCATGCTGGGCTCTCTATCACCTTTCGGAAGGCCCAGAAGACCAAATTCAAGCTATTATTGAGGCAGGAGTATGCCCAAAACTTGTGGAGCTTCTACAGCATTCATCAGTTGCAGTAATTTCACCTGCGCTTCAGACTCTAGGAAATATTGTTACTGGTGACAATGCTCAGAAACAGATTGTAGTTGATAACCAAGTGCTCCCGGGTCTTTACCAACTTCTTATGCGTGGAAACAGAAAAAGCATCCGTATAGAAGCTTGTTTGGCAATCTCAAATATCACTTCTGGGAACGAAGCTCAAATAGAGGCTGTCCTTAAGGCCAATATTATACCTCAACTGGTTCAAATTCTTCAACAAGATGAGTTAGACATCAAGTCGGAGGCTGCCTGGGCGATCTATAATGCCACTGCTGGAGGATCTCACGACAATATCAGgttgctggcggatcaagagcttggtttggaagaaaatGAACTCGAGAATCCGTTGGATGGTAGTCTACCTTTCGAGGTAACCAATACCTGA	1248	0.4335	MSERTGSGSGSDRTKRSNTSGVEPHESRRRKEENLIGVRRQKRARLRYPALTAIPKLLQSLCSEYPALESQITSHLNTLLALDDQIPLIDDVLKDVVLPRFVKFLDDEKEPQFQLEALWVLTNFAEASSKHTKVVLEVGVIPRIVSILKYNSEVEILEQAIYALGLIADYSPSYRDRALSNGSLRPLLSLVESLPGSSMLIARTLCSLVQGKPPVNFQRVKNALPVLQKLIHTANEEVVSDACWALYHLSEGPEDQIQAIIEAGVCPKLVELLQHSSVAVISPALQTLGNIVTGDNAQKQIVVDNQVLPGLYQLLMRGNRKSIRIEACLAISNITSGNEAQIEAVLKANIIPQLVQILQQDELDIKSEAAWAIYNATAGGSHDNIRLLADQELGLEENELENPLDGSLPFEVTNT	415

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma19g02155	415	MobiDBLite	consensus disorder prediction	1	35	-	-
	Gma19g02155	415	ProSiteProfiles	Armadillo/plakoglobin ARM repeat profile.	222	264	IPR000225	GO:0005515
	Gma19g02155	415	ProSiteProfiles	Armadillo/plakoglobin ARM repeat profile.	264	302	IPR000225	GO:0005515
	Gma19g02155	415	SMART	arm_5	295	336	IPR000225	GO:0005515
	Gma19g02155	415	SMART	arm_5	338	378	IPR000225	GO:0005515
	Gma19g02155	415	SMART	arm_5	212	251	IPR000225	GO:0005515
	Gma19g02155	415	SMART	arm_5	84	126	IPR000225	GO:0005515
	Gma19g02155	415	SMART	arm_5	253	293	IPR000225	GO:0005515
	Gma19g02155	415	SMART	arm_5	128	169	IPR000225	GO:0005515
	Gma19g02155	415	MobiDBLite	consensus disorder prediction	18	35	-	-
	Gma19g02155	415	Pfam	Armadillo/beta-catenin-like repeat	222	250	IPR000225	GO:0005515
	Gma19g02155	415	Pfam	Armadillo/beta-catenin-like repeat	295	336	IPR000225	GO:0005515
	Gma19g02155	415	Pfam	Armadillo/beta-catenin-like repeat	254	292	IPR000225	GO:0005515
	Gma19g02155	415	Pfam	Armadillo/beta-catenin-like repeat	338	377	IPR000225	GO:0005515
	Gma19g02155	415	PANTHER	IMPORTIN SUBUNIT ALPHA-4	12	392	-	-
	Gma19g02155	415	SUPERFAMILY	ARM repeat	12	391	IPR016024	-
	Gma19g02155	415	MobiDBLite	consensus disorder prediction	1	17	-	-
	Gma19g02155	415	PANTHER	IMPORTIN ALPHA	12	392	-	-
	Gma19g02155	415	Gene3D	-	51	396	IPR011989	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma19g02155	Gma-Chr19	50421412	50424885	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma19g02155	251	375	U-box Gene Family	AT5G42340	30.400	4.41e-07	50.1

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma19g02155	K15042		-	gmx:100793734	754.207