Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g02138 ATGGAATATCGATGGACGAATGGTAGGCAGGAAACCGGTGGCCGTGACAGAAGGCAATCTAAAAGGGAACAGGCATATCAGGACTCTCTTATTGAGGATTTGTCAGAGGATTTTAGTTTGCCAATCAACCACAGGCCAACAGAAAATGTTGATCTGGATAACGTGGAGCAAGCATCTTTGGACACACAGATAACATCATCTAATATTGGCTTTAAGCTCCTCCAAAAGATGGGATGGAAAGGAAAGGGTCTTGGGAAGGATGAACAAGGAATCATTGAGCCAATAAAATCTGGAATTAGAGATCCAAGACTGGGGGTTGGCAAGCAAGAAGAAGACGATTTCTTTACCGCAGAAGAAAATATCCAGCGAAAAAAACTGGATGTTGAGTTGGAGGAGACAGAGGAACATGTGAAGAAGCGGGAGGTCTTAGCTGAACGTGAACAAAAAATTCAAACTGAAGTGAAAGAAATCCGAAAGGTGTTCTATTGTGATCTCTGCAACAAGCAATACAAATTGGCAATGGAATTTGAAGCACACTTGAGCTCTTATGATCACAATCACAGAAAGCGTTTCAAACAAATGAAGGAAATGCATGGTGGTAGTAGTCGGGATGATAGGCAAAAGCGAGAACAGCTGCGTCAAGAGAGAGAAATGGCAAAGTTTGCTCAAATtgctgatgctcaaaaacagcaacaacttcaactgcaacaagagtctggatcagCAACAGTACCCTCGGAATCTAAAACTGCTACTGCACTTACAGATCAGGAGCAGCGAAATACTTTGAAGTTTGGGTTTTCTTCTAAAGGCAGTGCTTCCAAGATTACGTTTGGAGCCAAGAAGCAAAATGTTGCAAAGAAGCAAAATGTTCCGATCTCTTCTATATTCATTCAAGAGGAAGAAAACATTTGGGATTACATGATAGTTTGGAGTTTGGTAGACCAAAAATGTTACCTGCTTATCTGTGAGATCATGTTATGTGTGCAAGGATTTTATGTTTACTTTCGACTTTGGAGTATATTGCAGATGAAAGTTAATTGGGCTGAACTCACTACTGATAACAAAACACCGTAA 1077 0.3863 MEYRWTNGRQETGGRDRRQSKREQAYQDSLIEDLSEDFSLPINHRPTENVDLDNVEQASLDTQITSSNIGFKLLQKMGWKGKGLGKDEQGIIEPIKSGIRDPRLGVGKQEEDDFFTAEENIQRKKLDVELEETEEHVKKREVLAEREQKIQTEVKEIRKVFYCDLCNKQYKLAMEFEAHLSSYDHNHRKRFKQMKEMHGGSSRDDRQKREQLRQEREMAKFAQIADAQKQQQLQLQQESGSATVPSESKTATALTDQEQRNTLKFGFSSKGSASKITFGAKKQNVAKKQNVPISSIFIQEEENIWDYMIVWSLVDQKCYLLICEIMLCVQGFYVYFRLWSILQMKVNWAELTTDNKTP 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g02138 358 MobiDBLite consensus disorder prediction 9 27 - -
Gma19g02138 358 ProSiteProfiles G-patch domain profile. 66 111 IPR000467 GO:0003676
Gma19g02138 358 ProSitePatterns Zinc finger C2H2 type domain signature. 163 185 IPR013087 -
Gma19g02138 358 PANTHER FINGER DOMAIN PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G04180)-RELATED 1 299 - -
Gma19g02138 358 MobiDBLite consensus disorder prediction 1 27 - -
Gma19g02138 358 MobiDBLite consensus disorder prediction 194 215 - -
Gma19g02138 358 SMART G-patch_5 64 109 IPR000467 GO:0003676
Gma19g02138 358 Pfam Zinc-finger double-stranded RNA-binding 161 188 IPR022755 -
Gma19g02138 358 SUPERFAMILY beta-beta-alpha zinc fingers 144 196 IPR036236 -
Gma19g02138 358 Pfam G-patch domain 67 107 IPR000467 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g02138 Gma-Chr19 50279350 50282403 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g02138 1 297 C2H2 Transcription Factor Family AT5G26610 63.667 1.05e-117 341
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g02138 - - gmx:100793206 543.502
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g02138 19 50279350 50282403 Gma19g02138 19 50279350 50282403 ECH
Gma19g02138 19 50279350 50282403 Gma03g02102 03 46570343 46574000 GST