Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g02133 ATGGGGAGACACTCTTGCTGCTACAAGCAGAAGCTTCGTAAAGGCCTCTGGTCTCCTGAGGAAGACGAGAAGCTTTTGAATTACATCACCAAACATGGCCATGGATGTTGGAGCTCCGTTCCAAAACTAGCTGGTCTTCAGAGGTGTGGCAAGAGCTGCAGATTAAGATGGATAAATTATCTCAGGCCTGATTTGAAGAGAGGAGCATTCTCACAGCAGGAAGAGAACTCCATCATTGAACTTCATGCAGTCCTTGGCAACAGGTGGTCACAGATTGCAGCTCAGTTACCAGGAAGAACTGATAATGAGATAAAGAATCTATGGAACTCCTGTCTGAAGAAGAAGCTTAGGCAAAGAGGCATTGACCCAAACACACACCAGCCCCTCTCAGAGGTTGAGAATGACAAGGACAAGCCTCTTACAGCTGACAAAAGCAACCAGAAAGCCTCCAATGAGGTGAGTCTTATTGAGCCACCAAAACCAAAGCCAATATCTACTACTTCTATGCCCATGGATAGATATCCCCTTGAAGTTTCTTCAACTTTCAAGATCAGCGGTGGCAACAACAACAATAACAACAGCAACAGCACCCTAGACAGGTTTGACAGCTCCATCACTAGTTCTGATATGATGGGAATGGGATATTTCCCTTTTCAGCACTTGAACTATGGATCAAACATGGGACTCACTACTACACCCAACAACACTCCACTTTGCTTCATGCCAAGTTCCACTTCTTCTCAAATGATGTCAGAGCTGAATTCCACCATGCTCCATTCTATGTTCCCAACACATGTAAAACCCACTGTTAGCCTCCACTCTAACAACAACAACAACCCTTCTTCCATATCCTCTGATGGGGTTCAGAACTGGGAAACAAGTACCTTCAGTAATAACAACAATGCAAGCAAAAGCAATGGGAGCAGTAGCTGCAGCATCCAATTACAAAGCGGCAGCACTAACTTTCTTGATCATAGCAGCACAATAACATGGGGGCTGCAAGCAGAATCTGCCACCAAGGCAGATAAAGATGCTCATGTTGTTGTACCTTTGCAATCATCGGAACAAGAAGACATTAAATGGTCTGAATATCTCAACAACACCCCTTTCTTTCTGGGAACCATGTCAGTGCAGCATCAAACTACAAACTCTCTCTACAGTAGTGATGAGGTGAAGCCAGAAACAACAGGCTTCATAGCAGACGAATCAAGTACCAGTTGGCACCACAGCCAGCATTTTCAACCTTCGGAAATATATACCAAAGATCTGCAGAGATTTTCAGTGGCTTTTGGACAAACCCTGTAG 1305 0.4452 MGRHSCCYKQKLRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSQQEENSIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHQPLSEVENDKDKPLTADKSNQKASNEVSLIEPPKPKPISTTSMPMDRYPLEVSSTFKISGGNNNNNNSNSTLDRFDSSITSSDMMGMGYFPFQHLNYGSNMGLTTTPNNTPLCFMPSSTSSQMMSELNSTMLHSMFPTHVKPTVSLHSNNNNNPSSISSDGVQNWETSTFSNNNNASKSNGSSSCSIQLQSGSTNFLDHSSTITWGLQAESATKADKDAHVVVPLQSSEQEDIKWSEYLNNTPFFLGTMSVQHQTTNSLYSSDEVKPETTGFIADESSTSWHHSQHFQPSEIYTKDLQRFSVAFGQTL 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g02133 434 MobiDBLite consensus disorder prediction 129 143 - -
Gma19g02133 434 SMART sant 66 114 IPR001005 -
Gma19g02133 434 SMART sant 13 63 IPR001005 -
Gma19g02133 434 MobiDBLite consensus disorder prediction 119 171 - -
Gma19g02133 434 PANTHER MYB DOMAIN PROTEIN 55 1 427 - -
Gma19g02133 434 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Gma19g02133 434 PANTHER HOMEODOMAIN-RELATED 1 427 - -
Gma19g02133 434 CDD SANT 17 61 IPR001005 -
Gma19g02133 434 Gene3D - 68 149 - -
Gma19g02133 434 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gma19g02133 434 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Gma19g02133 434 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Gma19g02133 434 Gene3D - 11 67 - -
Gma19g02133 434 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gma19g02133 434 MobiDBLite consensus disorder prediction 269 311 - -
Gma19g02133 434 CDD SANT 69 109 IPR001005 -
Gma19g02133 434 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Gma19g02133 434 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g02133 Gma-Chr19 50227174 50229231 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g02133 1 434 MYB Transcription Factor Family AT1G09540 46.980 2.71e-111 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma19g02133 Myb_DNA-binding 2.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g02133 K09422 - gmx:100788976 854.744
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g02133 19 50227174 50229231 Gma03g02097 03 46514817 46516799 ECH
Gma03g02097 03 46514817 46516799 Gma19g02133 19 50227174 50229231 ECH
Gma19g02133 19 50227174 50229231 Gma19g02133 19 50227174 50229231 ECH
Gma19g02133 19 50227174 50229231 Gma10g01407 10 41035250 41037351 ECH
Gma19g02133 19 50227174 50229231 Gma20g00898 20 35405082 35406665 ECH
Gma19g02133 19 50227174 50229231 Gma03g02097 03 46514817 46516799 GST
Gma19g02133 19 50227174 50229231 Gma10g01407 10 41035250 41037351 PCT
Gma19g02133 19 50227174 50229231 Gma20g00898 20 35405082 35406665 PCT
Gma10g01407 10 41035250 41037351 Gma19g02133 19 50227174 50229231 PCT
Gma20g00898 20 35405082 35406665 Gma19g02133 19 50227174 50229231 PCT