Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g02129 ATGTCCTCTTCAAGGCCCAGCCAATCATCCAGCAATAATTCTGGCAGATCTAGAACATCAAGACTCAGTGCTAGGAGGATGGCTCAGACAACTTTAGATGCAAAACTGCATGCAACTTTTGAGGAATCGGGTAGTTCTTTTGACTACTCCAGTTCAGTGAGAATGTCTCCTGCTGGTACTGTCAGTGGAGACCATCAACCAAGGTCTGATAGAGCAACAAGTTCTTACCTCCATCAGACACAGAAAATCAAGCTTATCCAGCCATTTGGGTGTTTGTTAGCTTTAGATGAGAAAACATGCAAGGTCATTGCTTACAGTGAGAATGCACCTGAAATGCTCACCATGGTTAGTCATGCTGTCCCCAGTGTAGGTGACCACCCTGCTCTTGGCATTGGCACTGACATAAGAACTATTTTCACTGCCCCAAGTTCTGCTGCTATTCAGAAGGCACTGAGATTTGGGGATGTTTCACTTCATAACCCCATTCTAGTCCATTGCAAGACCTCTGGGAAGCCCTTTTATGCAATTATCCATCGTGTTACCGGTAGTGTGATCATCGATTTTGAGCCGGTCAAGCCTCATGAAGTTCCCATGACTGCATCAGGAGCCCTGCAATCCTACAAGCTTGCAGCAAAAGCAATAACTAGATTGGAATCCTTGACTACTGGGAACATGGAAACACTATGTAACACAATGGTTCGAGAGGTTTTTGAGCTCACAGGTTATGACAGAGTGATGGCTTATAAATTCCATGAGGATGATCATGGGGAAGTGATTGCTGAGGTTAAAAGGCCAGGCCTAGAGCCATATCTGGGGTTGCACTACCCAGCCACTGATATTCCTCAGGCGACACGCTTTTTGTTTATGAAGAACAAGGTGCGTATGATAGTTGATTGTTGTGCAAAGCATGTGAATGTGCTTCAAGACAAAAAAATTCCATTTGATTTAACCTTGTGTGGATCAACCTTGAGAGCTGCTCATAGTTGCCACTTGCAATACATGGAGAACATGAATTCTAGTGCTTCCTTGGTTATGGCAGTTGTGGTAAATGACAATGATGAAGATGGGGATAGTTCTGATGCTGTTCAACCACAGAAGAGTAAGAGACTCTGGGGTTTAGTAGTTTGCCATCACACTACTCCCAGATTCGTTCCTTTCCCTCTTAGGTATGCTTGTCAATTTCTGGCTCAAGTATTTGCGGTTCATGTGAGCAAAGAGCTAGAGATAGAGTATCAGATTATTGAGAAGAACATCCTGCAAACTCAAACACTCTTGTGTGATATGCTGGTGCAAGGTGAGCCCCTAGGCATTGTTTCACAAAGTCCTAATATAATGGATCTTGTGAAGTGTGATGGAGCAGCCCTGCTATATAAAAACAAGGTGTGGCGATTAGGGGTAACACCAAGTGAATCTCAGATAAAAGAGATAGCTTTGTGGCTCTTTGAGTGCCATGAGGATTCCACAGGTTTTTGTACAGATAGCTTGTCTGATGCAGGCTTCCCTGGGGCTGCTGCTCTTGGTGATATTGCATGTGGAATGGCAGCTGCCAGAATAGCTTCCAAAGATATACTTTTCTGGTTTCGGTCTCACACAGCCTCAGAAATCCGATGGGGTGGTGCAAAGCATGAGCCTGGTGAAAGGGATGATGGTAGGAGGGTGCATCCAAGATCATCATTCAAGGCTTTCCTTGAAGTTGTGAAGACAAGGAGCTTACCCTGGAAGACCTATGAAACGGATGCCATTCATTCGTTGCAGTTAATACTGAGAGATGCATTCAAAGAGACACAGAGCATGGAGATAAGCACATATGCTATCGATACAAGGCTAGGTGATTTGAAGATTGAAGGAATGCAAGAACTGGATGCAGTGACAAGTGAGGTGGTAAGGTTAATTGAAACAGCAACGGTGCCAATTTTGGCGGTTGATGTTAATGGGATGATCAATGGATGGAACACAAAAATTGCTGAGTTGACAGGTCTTCCAGTTGATGAAGCTATTGGAAAGCATTTACTCACACTTGTAGAGGATTTTTCAGTAGATAGAGTCAAGAAGATGTTGGACATGGCATTGCAGGGTGAGGAAGAGAGAAATGTCCAATTTGAGATCCAAACACATCATATGAAGATTGATTCTGGTCCCATCAGCTTGGTAGTTAATGCTTGTGCAAGCAGGGATCTTCAAGATAATGTTGTGGGAGTTTGTTTTCTGGCACAAGATATAACTGCTCAGAAAACAATGATGGACAAATTCACCCGAATTGAAGGTGACTACAAGGCAATTGTACAGAACCCAAACCCATTGATCCCTCCAATATTTGGCACAGATGAATTTGGTTGGTGTTGTGAATGGAATTCAGCTATGGCAAAATTAACTGGATGGAAGCGAGAGGAGGTAATGGATAAAATGCTTTTAGGAGAGGTTTTCGGGACCCAAATAGCTTGTTGTCGCCTAAGGAATCATGAAGCTGTTGTTAACTTTAGCATTGTACTTAATACAGCCATGGCTGGTTTGGAAACAGAGAAGGTTCCTTTTGGTTTCTTTGCTCGTGATGGAAAGCATGTAGAATGTATTCTTTCTATGACTAAGAAATTGGATGCAGAAGGTGTAGTTACTGGTGTCTTCTGCTTCTTGCAACTAGCAAGTGCAGAGCTGCAACAAGCATTACACATTCAGCGCATATCTGAACAAACTTCATTGAAAAGACTGAAAGATTTAACTTATTTGAAAAGGCAAATCCAGAATCCTTTATATGGGATTATGTTCTCCCGGAAATTGTTAGAGGGTACTGAGTTGGGAGCTGAACAAAAACAATTTCTGCAAACGGGCATTCGGTGTCAACGCCAGATTAGCAAAATTCTGGATGACTCGGATCTTGACAGCATCATTGATGGCTACATGGATTTGGAGATGGTTGAATTCACTTTGCATGAAGTTTTGGTTGCCTCCCTAAGTCAAGTCATGACAAAGAGTAATGCAAAAGGTATCCGAGTAGTCAATGATGTTGAAGAGAAGATCACAACAGAGACCTTATATGGTGATAGTATCAGGCTTCAGCAGGTCTTAGCTGACTTTTTATTGATTTCCATCAATTTCACACCAACTGGAGGTCAGGTTGTTGTAGCAGCCACGCTAACCCAACAGCAGTTAGGGAAATTAGTTCATCTTGCTAATTTGGAGTTCAGCATAACGCATGATAGTTTTGGGGTTCCAGAAACATTGCTGAACCAGATGTTTGGACGCGATGGACATGAATCTGAGGAGGGTATTAGCATGCTGATTAGCAGAAAGCTGCTAAAGCTCATGAATGGAGACGTACGTTATTTAAGGGAAGCAGGCAAATCATCTTTCATCCTATCTGTTGAACTTGCCGCAGCACATAAATCCAACACTTAA 3393 0.4282 MSSSRPSQSSSNNSGRSRTSRLSARRMAQTTLDAKLHATFEESGSSFDYSSSVRMSPAGTVSGDHQPRSDRATSSYLHQTQKIKLIQPFGCLLALDEKTCKVIAYSENAPEMLTMVSHAVPSVGDHPALGIGTDIRTIFTAPSSAAIQKALRFGDVSLHNPILVHCKTSGKPFYAIIHRVTGSVIIDFEPVKPHEVPMTASGALQSYKLAAKAITRLESLTTGNMETLCNTMVREVFELTGYDRVMAYKFHEDDHGEVIAEVKRPGLEPYLGLHYPATDIPQATRFLFMKNKVRMIVDCCAKHVNVLQDKKIPFDLTLCGSTLRAAHSCHLQYMENMNSSASLVMAVVVNDNDEDGDSSDAVQPQKSKRLWGLVVCHHTTPRFVPFPLRYACQFLAQVFAVHVSKELEIEYQIIEKNILQTQTLLCDMLVQGEPLGIVSQSPNIMDLVKCDGAALLYKNKVWRLGVTPSESQIKEIALWLFECHEDSTGFCTDSLSDAGFPGAAALGDIACGMAAARIASKDILFWFRSHTASEIRWGGAKHEPGERDDGRRVHPRSSFKAFLEVVKTRSLPWKTYETDAIHSLQLILRDAFKETQSMEISTYAIDTRLGDLKIEGMQELDAVTSEVVRLIETATVPILAVDVNGMINGWNTKIAELTGLPVDEAIGKHLLTLVEDFSVDRVKKMLDMALQGEEERNVQFEIQTHHMKIDSGPISLVVNACASRDLQDNVVGVCFLAQDITAQKTMMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCCEWNSAMAKLTGWKREEVMDKMLLGEVFGTQIACCRLRNHEAVVNFSIVLNTAMAGLETEKVPFGFFARDGKHVECILSMTKKLDAEGVVTGVFCFLQLASAELQQALHIQRISEQTSLKRLKDLTYLKRQIQNPLYGIMFSRKLLEGTELGAEQKQFLQTGIRCQRQISKILDDSDLDSIIDGYMDLEMVEFTLHEVLVASLSQVMTKSNAKGIRVVNDVEEKITTETLYGDSIRLQQVLADFLLISINFTPTGGQVVVAATLTQQQLGKLVHLANLEFSITHDSFGVPETLLNQMFGRDGHESEEGISMLISRKLLKLMNGDVRYLREAGKSSFILSVELAAAHKSNT 1130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g02129 1130 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1012 1122 IPR003594 -
Gma19g02129 1130 TIGRFAM sensory_box: PAS domain S-box protein 630 746 IPR000014 -
Gma19g02129 1130 Gene3D - 412 585 IPR043150 -
Gma19g02129 1130 PRINTS Phytochrome signature 139 161 IPR001294 GO:0006355|GO:0009584
Gma19g02129 1130 PRINTS Phytochrome signature 239 258 IPR001294 GO:0006355|GO:0009584
Gma19g02129 1130 PRINTS Phytochrome signature 324 345 IPR001294 GO:0006355|GO:0009584
Gma19g02129 1130 PRINTS Phytochrome signature 437 457 IPR001294 GO:0006355|GO:0009584
Gma19g02129 1130 PRINTS Phytochrome signature 522 541 IPR001294 GO:0006355|GO:0009584
Gma19g02129 1130 PRINTS Phytochrome signature 555 573 IPR001294 GO:0006355|GO:0009584
Gma19g02129 1130 PRINTS Phytochrome signature 626 642 IPR001294 GO:0006355|GO:0009584
Gma19g02129 1130 PRINTS Phytochrome signature 645 660 IPR001294 GO:0006355|GO:0009584
Gma19g02129 1130 PRINTS Phytochrome signature 718 735 IPR001294 GO:0006355|GO:0009584
Gma19g02129 1130 PRINTS Phytochrome signature 738 758 IPR001294 GO:0006355|GO:0009584
Gma19g02129 1130 MobiDBLite consensus disorder prediction 1 28 - -
Gma19g02129 1130 Gene3D PAS domain 769 883 - -
Gma19g02129 1130 SMART HKATPase_4 1012 1124 IPR003594 -
Gma19g02129 1130 ProSiteProfiles PAS repeat profile. 756 808 IPR000014 -
Gma19g02129 1130 MobiDBLite consensus disorder prediction 1 27 - -
Gma19g02129 1130 SMART HisKA_10 901 965 IPR003661 GO:0000155|GO:0007165
Gma19g02129 1130 CDD PAS 767 878 IPR000014 -
Gma19g02129 1130 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 224 397 IPR016132 -
Gma19g02129 1130 Gene3D PAS domain 622 755 - -
Gma19g02129 1130 Gene3D - 205 568 IPR029016 -
Gma19g02129 1130 CDD PAS 634 740 IPR000014 -
Gma19g02129 1130 Pfam Phytochrome region 420 595 IPR013515 GO:0006355|GO:0009584
Gma19g02129 1130 Gene3D - 940 1117 IPR036890 -
Gma19g02129 1130 Pfam PAS fold 626 740 IPR013767 GO:0006355
Gma19g02129 1130 Pfam PAS fold 756 878 IPR013767 GO:0006355
Gma19g02129 1130 SUPERFAMILY PYP-like sensor domain (PAS domain) 83 193 IPR035965 -
Gma19g02129 1130 SMART pas_2 625 691 IPR000014 -
Gma19g02129 1130 SMART pas_2 755 825 IPR000014 -
Gma19g02129 1130 Gene3D PAS domain 83 327 - -
Gma19g02129 1130 ProSiteProfiles PAS repeat profile. 623 693 IPR000014 -
Gma19g02129 1130 SUPERFAMILY PYP-like sensor domain (PAS domain) 770 876 IPR035965 -
Gma19g02129 1130 SMART gaf_1 224 417 IPR003018 GO:0005515
Gma19g02129 1130 PIRSF Phytochrome_conventional 1 1130 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Gma19g02129 1130 PANTHER PHYTOCHROME A 1 1126 - -
Gma19g02129 1130 PANTHER TWO-COMPONENT HISTIDINE KINASE 1 1126 - -
Gma19g02129 1130 Pfam GAF domain 224 407 IPR003018 GO:0005515
Gma19g02129 1130 MobiDBLite consensus disorder prediction 46 75 - -
Gma19g02129 1130 SUPERFAMILY GAF domain-like 415 595 - -
Gma19g02129 1130 SUPERFAMILY PYP-like sensor domain (PAS domain) 629 735 IPR035965 -
Gma19g02129 1130 Pfam PAS fold 76 191 IPR013654 GO:0006355
Gma19g02129 1130 ProSiteProfiles Histidine kinase domain profile. 907 1126 IPR005467 -
Gma19g02129 1130 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 968 1115 IPR036890 -
Gma19g02129 1130 SUPERFAMILY GAF domain-like 204 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g02129 Gma-Chr19 50181682 50188016 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g02129 1 1127 Histidine Kinase Gene Family AT1G09570 74.291 0.0 1762
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g02129 K12120 - gmx:100791098 2191.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g02129 19 50181682 50188016 Gma19g02129 19 50181682 50188016 ECH
Gma19g02129 19 50181682 50188016 Gma03g02093 03 46469949 46472130 GST
Gma19g02129 19 50181682 50188016 Gma10g01400 10 40856643 40861306 PCT
Gma19g02129 19 50181682 50188016 Gma20g00891 20 35284548 35290193 PCT
Gma10g01400 10 40856643 40861306 Gma19g02129 19 50181682 50188016 PCT
Gma20g00891 20 35284548 35290193 Gma19g02129 19 50181682 50188016 PCT