Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g02125 ATGGCTTCTTCTATCATAGGCGTTTCCTCCATTTACCAAACACCCCCTCTCGAACTATACCAGAGGCCAAGCACTGCTTCCACTTCCTCCGTTAGGTTGCAATCTTTAGACTCCAAGTCTCACTTCAACAACCTCCTCCGAGCCCACCGCCACTCCACTGGCCCGGGCCTCAAGCCTACACCGTCTTTCGTCCCCTCCGCCGTCGCCACCCCCAACTCCTCCCTCCTCAGCGAAGAAGCCTTCAAAGGACTTGCCCGCGAATTCGACCAAAACGACGACCAATTCACCCGCGCCTCCTCCGCCGCCGAATCCGTTAACCCCGACGAACTCGACATTTCCAAGCTCGACTTGCCCTCGCGTCTCGTTGAGTCTCTCCGGAGCCGTGGGATTACTCAACTTTTCCCCATTCAGAGAGCGGTGTTAGTACCTGCACTAGAAGGTAGAGATATCATTGCGCGAGCGAAGACCGGTACCGGAAAGACGTTAGCGTTCGGGATTCCAATTATTAAAGGCCTCACTGAAGATGAGCACGCACCTTCTCACAGGAGGTCTGGTAGGCTTCCGAGATTTTTGGTGCTTGCTCCTACGAGAGAGTTGGCGAAGCAAGTGGAGAAGGAGATAAAAGAATCTGCACCTTACCTGAGCACTGTTTGTGTTTACGGTGGTGTTTCTTATGTTACTCAGCAGAGTGCGCTTTCGCGCGGTGTTGACGTGGTGGTTGGGACACCGGGGAGAATAATTGACTTGATAAACGGGAACAGCCTTAAGCTCAGTGAGGTTCAATATTTGGTTCTTGATGAAGCGGACCAGATGCTTGCTGTTGGGTTTGAGGAGGATGTGGAAATGATTCTGGAGAATCTTCCATCTCAGAGGCAGAGCATGCTTTTCTCTGCTACCATGCCCAGTTGGGTGAAGAAGTTGGCGAGAAAATATTTGAACAATCCACTCACAATTGATTTGGTTGGTGATGAAGAGGAAAAGCTTGCTGAAGGGATAAAACTTTATGCTATAGCAGCCACTGCCACTTCAAAGCGGACAATTCTTTCTGATCTTGTAACTGTTTATGCAAAGGGTGGGAAGACTATAGTTTTTACACAGACAAAAAGAGATGCTGATGAAGTATCATTGTCATTAACAAATAGTATAATGTCTGAAGCACTGCATGGTGATATATCTCAGCATCAGAGAGAGAGAACATTGAATGGTTTCCGGCAAGGAAAATTCACAGTGCTTGTTGCCACTGATGTTGCAGCTCGTGGACTTGACATTCCCAATGTTGATTTGATTATCCATTATGAGCTTCCCAATGATCCTGAGACCTTCGTACATCGCTCTGGTCGTACTGGGCGTGCAGGAAAACAAGGTAATGCCATTCTGTTGTACACCAGTAGCCAGCGGAGAACGGTTAGATCCCTTGAACGTGATGTAGGCTGCAAGTTTGAATTTGTTAGTTCACCAGCTATGGAAGAGGTTTTGGAGGCATCTGCTGAGCAGGTTGTTGCCACACTTTGTGGAGTTCATCCCGAGTCTGTTCAGTTTTTCACCCCTACTGCACAGAAACTGATCGAAGAACAAGGAACAAGTGCCCTTGCAGCTGCACTTGCACAACTGAGTGGATTCTCCCGACCACCATCATCCCGGTCTCTTATCACCCATGAACAGGGATGGATTACATTGCAACTAACTCGAGATTCAGATAGTAGAAGATATTTTTCAGCAAGATCAGTCACTGGGTTTCTTTCTGATGTTTATTCTGCAGCTGCTGATGAAGTTGGAAAAATCCATTTAATTGCAGATGAAAGGGTTCAAGGAGCCGTTTTTGATCTTCCCGAGGAAATTGCTAAAGAGTTACTTAATAGGGACATACCACCTGGAAACACCATTTCCAAGATCACCAAGCTACCTCCTTTGCAAGATGATGGGCCTCCAAGTGATTTCTATGGGAGGTTCTCTGATAGAGATAGAAGTAGCCGAAGAGGGTCttctacttctaggggaggttttagttctaggggaggttcttcttctagggACCGGAGAGGTTTTAAATCCTCACGGGGATGGGATGGGGAAGACTCTGATGATGATGACTTTGGTGATCGATCTAGTTGGAGAGGTGGTAGAAATTTTAAAACTGGCAACAGCTGGTCTCGAGCAGCAGGTAGAAGCAGTGGGGATGATTGGCTAATTGGAGGTAGTAGACGATCAAGCAGGCCTTCATCATCAGACAGatttggaggggcctgttttaattgcggagaatccgggcatcgtgcatcagattgtccaaacccttcaaacagacgaagcttttaA 2316 0.4486 MASSIIGVSSIYQTPPLELYQRPSTASTSSVRLQSLDSKSHFNNLLRAHRHSTGPGLKPTPSFVPSAVATPNSSLLSEEAFKGLAREFDQNDDQFTRASSAAESVNPDELDISKLDLPSRLVESLRSRGITQLFPIQRAVLVPALEGRDIIARAKTGTGKTLAFGIPIIKGLTEDEHAPSHRRSGRLPRFLVLAPTRELAKQVEKEIKESAPYLSTVCVYGGVSYVTQQSALSRGVDVVVGTPGRIIDLINGNSLKLSEVQYLVLDEADQMLAVGFEEDVEMILENLPSQRQSMLFSATMPSWVKKLARKYLNNPLTIDLVGDEEEKLAEGIKLYAIAATATSKRTILSDLVTVYAKGGKTIVFTQTKRDADEVSLSLTNSIMSEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKQGNAILLYTSSQRRTVRSLERDVGCKFEFVSSPAMEEVLEASAEQVVATLCGVHPESVQFFTPTAQKLIEEQGTSALAAALAQLSGFSRPPSSRSLITHEQGWITLQLTRDSDSRRYFSARSVTGFLSDVYSAAADEVGKIHLIADERVQGAVFDLPEEIAKELLNRDIPPGNTISKITKLPPLQDDGPPSDFYGRFSDRDRSSRRGSSTSRGGFSSRGGSSSRDRRGFKSSRGWDGEDSDDDDFGDRSSWRGGRNFKTGNSWSRAAGRSSGDDWLIGGSRRSSRPSSSDRFGGACFNCGESGHRASDCPNPSNRRSF 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g02125 771 MobiDBLite consensus disorder prediction 676 690 - -
Gma19g02125 771 Pfam Helicase conserved C-terminal domain 345 452 IPR001650 -
Gma19g02125 771 MobiDBLite consensus disorder prediction 621 771 - -
Gma19g02125 771 Gene3D - 336 530 IPR027417 -
Gma19g02125 771 CDD DEADc 121 319 - -
Gma19g02125 771 MobiDBLite consensus disorder prediction 646 660 - -
Gma19g02125 771 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 141 318 IPR014001 -
Gma19g02125 771 ProSiteProfiles Zinc finger CCHC-type profile. 749 764 IPR001878 GO:0003676|GO:0008270
Gma19g02125 771 SUPERFAMILY Retrovirus zinc finger-like domains 733 768 IPR036875 GO:0003676|GO:0008270
Gma19g02125 771 Gene3D - 721 770 - -
Gma19g02125 771 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 347 492 IPR001650 -
Gma19g02125 771 MobiDBLite consensus disorder prediction 707 721 - -
Gma19g02125 771 Pfam DEAD/DEAH box helicase 134 307 IPR011545 GO:0003676|GO:0005524
Gma19g02125 771 SMART c2hcfinal6 748 764 IPR001878 GO:0003676|GO:0008270
Gma19g02125 771 SMART ultradead3 129 335 IPR014001 -
Gma19g02125 771 Pfam Zinc knuckle 748 764 IPR001878 GO:0003676|GO:0008270
Gma19g02125 771 Gene3D - 111 322 IPR027417 -
Gma19g02125 771 SMART helicmild6 372 452 IPR001650 -
Gma19g02125 771 MobiDBLite consensus disorder prediction 661 675 - -
Gma19g02125 771 CDD GUCT_Hera 546 625 - -
Gma19g02125 771 PANTHER - 32 761 - -
Gma19g02125 771 CDD SF2_C_DEAD 332 461 - -
Gma19g02125 771 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 32 761 - -
Gma19g02125 771 Pfam GUCT (NUC152) domain 539 638 IPR012562 GO:0003723|GO:0004386|GO:0005524
Gma19g02125 771 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 189 473 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g02125 Gma-Chr19 50142014 50147585 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g02125 65 474 Eukaryotic Initiation Factors Gene Family AT1G72730 35.561 1.68e-64 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g02125 - - gmx:100789516 1390.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g02125 19 50142014 50147585 Gma03g02087 03 46423655 46431481 ECH
Gma19g02125 19 50142014 50147585 Gma19g02125 19 50142014 50147585 ECH
Gma19g02125 19 50142014 50147585 Gma03g02087 03 46423655 46431481 GST
Gma19g02125 19 50142014 50147585 Gma10g01396 10 40789312 40795635 PCT
Gma19g02125 19 50142014 50147585 Gma20g00887 20 35200650 35206046 PCT
Gma10g01396 10 40789312 40795635 Gma19g02125 19 50142014 50147585 PCT
Gma20g00887 20 35200650 35206046 Gma19g02125 19 50142014 50147585 PCT