Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g02108 ATGGGCAAACCCGCTAGTTCTTCTTCCTCCTCTATTAGCAGCACCACCAACCGTCACCTCCTCCTTTCAACCGCATCTTCTCTCACTCAAGAACTTCCCACTGATCTTAGGCTTGGACTCGGCATTTCCGCCACTCAACATTTTGCCTCTTCTATTTCAAGGGGGCAATGGCAACAATCACACCACCCTTTTGTGAACATTTATTCACAAGTTCCTGCTGAAGTGAATGATTGCAGCAACGATCATAGCAGCTTCTTTGTGAAGGTGTACATGGAAGGGATTCCAATCGGAAGGAAGCTCAATATACTAGCTCATGGAGGCTACTATGAGTTAGTCAGGACTCTTGAACACATGTTTGACACTACCATTCTTTGGGGAACAGAAATGAATGGAGTGCAACCAGAGAGATGCCATGTGCTAACTTATGAAGATGAAGAAGGGGATTTGGTCATGGTTGGAGATGTCCCTTGGGAGATGTTCTTATCGACGGTGAAGAGGTTGAAGATCACAAGGGTAGACACATTCGGGTGTTAA 534 0.4569 MGKPASSSSSSISSTTNRHLLLSTASSLTQELPTDLRLGLGISATQHFASSISRGQWQQSHHPFVNIYSQVPAEVNDCSNDHSSFFVKVYMEGIPIGRKLNILAHGGYYELVRTLEHMFDTTILWGTEMNGVQPERCHVLTYEDEEGDLVMVGDVPWEMFLSTVKRLKITRVDTFGC 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g02108 177 ProSiteProfiles PB1 domain profile. 84 174 IPR000270 GO:0005515
Gma19g02108 177 SUPERFAMILY CAD & PB1 domains 80 169 - -
Gma19g02108 177 Pfam AUX/IAA family 79 171 IPR033389 -
Gma19g02108 177 Gene3D - 78 176 - -
Gma19g02108 177 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 2 176 IPR003311 GO:0005634|GO:0006355
Gma19g02108 177 PANTHER AUXIN-INDUCED PROTEIN 2 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g02108 Gma-Chr19 49945528 49946436 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g02108 72 169 B3 DNA Binding Superfamily AT4G23980 35.714 4.21e-13 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Gma19g02108 AUX_IAA 2.2e-27 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g02108 K14484 - gmx:100783140 357.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g02108 19 49945528 49946436 Gma03g02071 03 46261199 46263109 GST
Gma19g02108 19 49945528 49946436 Gma10g01374 10 40547483 40548893 PCT
Gma19g02108 19 49945528 49946436 Gma02g00066 02 782150 783180 PCT
Gma10g01374 10 40547483 40548893 Gma19g02108 19 49945528 49946436 PCT
Gma02g00066 02 782150 783180 Gma19g02108 19 49945528 49946436 PCT