Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g02097 ATGTCTGGAAAGGTAATTATCTCGGCTGTTTCTCTCATCCTGGTGGTTGGAGTGGCCATAGGTGTGGTGGTGGCCGTCAACAAGAAGGGCGAGGATCCCACACTTCAATCTCAACAAAAATCAGTAGGGGTTATCTGCCAAAACACTGATGACCAGAAGCTCTGCCACGAAACCCTAAGCTCCGTGAAGGGCATGGACACCGCTGATCCAAAGGCTTACATCGCCAAGGCGGTGAAAGCCACCATGGACAGCGTGACCAGGGCCTTCAACATGAGTGATAGGCTCAGTACCGAGTACGGAGGCAACGATAACGGAACCAAGATGGCCCTTGATGATTGCAAGGACCTCTTGCAATCCGCTATCGAGAGCCTCCAACTCAGCATTGACATGGTTCACAACAACAACTTGCAGGCCGTGCATAACCAACAGGCTGACTTCAAGAACTGGCTCAGCGCTGTTATCTCGTACCAACAGGCCTGCATGGAGGGTTTTGACGATGGCAAAGAAGGTGAGAAGAAGATCAAGGAGCAGTTTCATACCGAGACCTTGGACAATGTTCAGAAACTCACTGGCATCACCCTTGACATTGTGAGTGGTTTGTCCAACATCCTCGAGAAGTTCGGGTTGAAGTTTAATCTTAAACCCGCGTCTCGCCGTCTTCTCGGCAAGGATGGGTTGCCCACTTGGTTCTCTGCTGCTGATCGTAAGCTTTTGGGTCGTGGATGGAGATCACGTGTCAAGCCCAATGTTGTGGTTGCCCAGGATGGCACTGGTCAGTTCAAAACCGTTGCCGATGCTATTGCTTCCTACCCAAAGGATAACAAAGGTAGATACATTATCTACGTTAAGGCTGGTGTCTATGACGAGTACATCACCGTTCCCAAGAGTTCAAAGAACATTCTCATGTACGGTGATGGCCCTGCTAAGACCATCATCACCGGTCGCAAGAACTTCGTCGATGGTGTCAAGACCATGCAAACTGCCACTTTCGCCAACACTGCAGAAGGGTTCATTGCCAAGGCAATGACATTCCAGAACACTGCCGGTGCTGAGGGACACCAAGCCGTTGCATTCAGGAACCAAGGAGACATGTCCGCTCTCGTTGGTTGCCACATCTTGGGTTACCAAGACACCTTGTACGTCCAGACCAACAGGCAATTCTACCGCAACTGCGTCATCTCCGGCACAGTCGACTTCATCTTCGGCACCTCCTCCACCGTGATCCAGCACTCCGTTATCATCGTGAGGAAGCCCCTGGACAACCAGTTCAACACAGTCACCGCCGACGGAACATCCCAGAAGAACATGGCTACAGGAATCGTGATCCAGGGTTGCAACATCGTCCCAGAAGCCGAACTTTTCCCTACAAGGTTCCAAGTGAAGTCATACCTTGGAAGGCCATGGAAGCAATTCTCAAGGACGGTTGTGATGGAATCCACCGTGGGTGACTTCCTTCACCCCGAAGGATGGTGCCCATGGGCCGGTGAACACTTCGAAGACACCTTGTACTATGCTGAATACAACAACGATGGACCTGGTGCCAACGTTAACGGAAGGATCAAGTGGAAGGGTTACCGTGGTCTTATTAGCCGCGAAGAAGCTACCCAATTCACCCCTGCCCAGTTCCTACAGGCTGGAGCCAACGGTGGAAGCGACTGGTTGAAAGCTCTCCGTCAAAGCACAGAAGAGGAGCTGCGGAATTCTTCACTTCATCTCAGCGAGACAGATAGAAAAAGCATTAACGATGAGGTTTCGCGGAACCTTTGTTATTATTTTCCGTTATCTTTATCGGCTGCGAAACCATTTCAATTCAAACTCCTGAATTTCCGGCATCGAGCTTCATTCTTCCTCCGTTCTTACTCTGCCGAGGTGCAAGCTCAACTGTCCCCGGAGCTCTTAAACATAATGGAACAAAGACTCTCCGCTATTGAGTACATGACTGCTTCTTTTAACAATTTTCTAAATCAGGAGCTTTGGAAGCTAAGTGGTTCTATTGACCTTATTAAGGAATTGAGGGGCAAACAGAAGGAAATTGATGGCTTGAAGTCACTAATAGCTGAATGTTCTGAGGATAAGGACATGCTTAATATGGCTACAGAGGAAATTGGTCAGGCAGTGGAAGAAGAAAGAAGACTGCAAAATTTTCTGTTGAAGTCATTACTTCCTAAGGATGATGCTGATGATAGGGATTGCATTTTGGAGGTGCGACCAGGCACTGGTGGGGAGGAGGCTTCCTTGTTTGCGATGGATATCTTTAGAATGTATGAGAAGTATGCTCTCAAGAATGGCTGGAAGTTTGAAGTAGTAGATATAGCTCAATCTGATCTTAAAGGATACAATGAGGCTAGTGCAGCAATTGCTGGAGTCGGTGTTTTTGGGAAACTAAAATTTGAGAGTGGAATTCATAGAGTCCAGAGTTTACGAATTCTTGTGACAGAAAAGTCGGGATGTATTAATACCAATGCTGTTTCTGTTGCAATCCTTCCTCAGGCTGATGAGGTAGATGTTCAATTGAAGCATGAAGACTTAAGAATTGATACCTATAGATCTGGTGGTTCAGGTGGTCAGCATGCAAATACAACCAACAGTGCTGTTAGAGTAACCCACATTCCAACAGGGACTATGATTACTATACAAGATGAGTGTTCTCAACATATGGCTAGTGTTTCAAAATATTTGGCAAGGGCCGTGTAA 2694 0.477 MSGKVIISAVSLILVVGVAIGVVVAVNKKGEDPTLQSQQKSVGVICQNTDDQKLCHETLSSVKGMDTADPKAYIAKAVKATMDSVTRAFNMSDRLSTEYGGNDNGTKMALDDCKDLLQSAIESLQLSIDMVHNNNLQAVHNQQADFKNWLSAVISYQQACMEGFDDGKEGEKKIKEQFHTETLDNVQKLTGITLDIVSGLSNILEKFGLKFNLKPASRRLLGKDGLPTWFSAADRKLLGRGWRSRVKPNVVVAQDGTGQFKTVADAIASYPKDNKGRYIIYVKAGVYDEYITVPKSSKNILMYGDGPAKTIITGRKNFVDGVKTMQTATFANTAEGFIAKAMTFQNTAGAEGHQAVAFRNQGDMSALVGCHILGYQDTLYVQTNRQFYRNCVISGTVDFIFGTSSTVIQHSVIIVRKPLDNQFNTVTADGTSQKNMATGIVIQGCNIVPEAELFPTRFQVKSYLGRPWKQFSRTVVMESTVGDFLHPEGWCPWAGEHFEDTLYYAEYNNDGPGANVNGRIKWKGYRGLISREEATQFTPAQFLQAGANGGSDWLKALRQSTEEELRNSSLHLSETDRKSINDEVSRNLCYYFPLSLSAAKPFQFKLLNFRHRASFFLRSYSAEVQAQLSPELLNIMEQRLSAIEYMTASFNNFLNQELWKLSGSIDLIKELRGKQKEIDGLKSLIAECSEDKDMLNMATEEIGQAVEEERRLQNFLLKSLLPKDDADDRDCILEVRPGTGGEEASLFAMDIFRMYEKYALKNGWKFEVVDIAQSDLKGYNEASAAIAGVGVFGKLKFESGIHRVQSLRILVTEKSGCINTNAVSVAILPQADEVDVQLKHEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGTMITIQDECSQHMASVSKYLARAV 897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g02097 897 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 41 201 IPR035513 -
Gma19g02097 897 Gene3D - 831 886 - -
Gma19g02097 897 Gene3D - 733 830 - -
Gma19g02097 897 CDD PMEI-like_3 45 202 - -
Gma19g02097 897 PANTHER PECTINESTERASE 3 557 - -
Gma19g02097 897 TIGRFAM PME_inhib: pectinesterase inhibitor domain 12 199 IPR006501 GO:0004857
Gma19g02097 897 ProSitePatterns Pectinesterase signature 1. 274 293 IPR018040 -
Gma19g02097 897 Pfam Pectinesterase 249 545 IPR000070 GO:0030599|GO:0042545
Gma19g02097 897 Pfam Plant invertase/pectin methylesterase inhibitor 44 196 IPR006501 GO:0004857
Gma19g02097 897 SUPERFAMILY Pectin lyase-like 245 545 IPR011050 -
Gma19g02097 897 Gene3D - 243 564 IPR012334 -
Gma19g02097 897 Gene3D Invertase/pectin methylesterase inhibitor family protein 38 201 IPR035513 -
Gma19g02097 897 PANTHER PECTINESTERASE 3 557 - -
Gma19g02097 897 Pfam PCRF domain 652 825 IPR005139 GO:0006415
Gma19g02097 897 Pfam RF-1 domain 832 886 IPR000352 GO:0003747|GO:0006415
Gma19g02097 897 SUPERFAMILY Release factor 654 886 IPR045853 -
Gma19g02097 897 SMART PMEI_2 37 196 IPR006501 GO:0004857
Gma19g02097 897 SMART PCRF_a_2 683 798 IPR005139 GO:0006415
Gma19g02097 897 ProSitePatterns Pectinesterase signature 2. 393 402 IPR033131 -
Gma19g02097 897 Gene3D - 631 725 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g02097 Gma-Chr19 49833167 49840592 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g02097 1 555 Carbohydrate Esterase AT2G47030 41.047 7.43e-135 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g02097 K01051 - gmx:100781507 1083.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g02097 19 49833167 49840592 Gma10g00088 10 891941 893814 PCT
Gma19g02097 19 49833167 49840592 Gma02g00080 02 872295 877829 PCT
Gma10g01360 10 40319190 40321641 Gma19g02097 19 49833167 49840592 PCT
Gma02g00079 02 865421 867342 Gma19g02097 19 49833167 49840592 PCT