Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g02081 ATGGATGTTAATAAGGTGAAGAAAGCACGGTCCATAGTGCTGGATTGTGAAGAAGAAATCAGAAAAGGTCCATGGAGCGTTGAAGAGGACACCATTCTCCAAAATCACGTCGCCACCCACGGCGACGTTAACGCCATTCTTTTTTCAATTCTAATAATATGTGCAGGCCTGAAAAGATCGGGGAAAAGTTGCAGGTTAAGATGGCTAAACTACTTGCGTCCCGATGTTCGTCGCGGAAATATAACACTCCAAGAACAGATAACTATTCTGGAGCTCCACTCTCGCTGGGGCAATAGGTGGTCGAAAATTGCTCGGCATCTTCCGGGTAGAACAGACAACGAAATAAAGAATTATTGGAGGACCCGAGTGATTAAGCAAGCAAGGAATCTCAATTGTGACGTGGACAGTAAACAGTTCCAAGATGCTTTGCGTTGCGTGTGGATGCCCCGTTTGATAGAGCGGATTCAGCCACCATTACCAATACCATCGGAATTAACTCACGGCCCGGCCCATATTGCCACCTCGCAACTTGGCCCAAACCCAACCGCTCAGGCCCAACATGAGTTTCATGGTTCCTTGGAGTTAAACGCTCCTTTAGATTCTGAACATCATGTTTGGGGTGCATGCCACTGTTTCAATGGGAATAGCACGTTACCTTTAGGTGGTGGGGACTTGATGGAAAGTTTGTGGGATGATTTGGAAATTAAACACAATTTCCTTGCGTGA 726 0.4628 MDVNKVKKARSIVLDCEEEIRKGPWSVEEDTILQNHVATHGDVNAILFSILIICAGLKRSGKSCRLRWLNYLRPDVRRGNITLQEQITILELHSRWGNRWSKIARHLPGRTDNEIKNYWRTRVIKQARNLNCDVDSKQFQDALRCVWMPRLIERIQPPLPIPSELTHGPAHIATSQLGPNPTAQAQHEFHGSLELNAPLDSEHHVWGACHCFNGNSTLPLGGGDLMESLWDDLEIKHNFLA 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g02081 241 Pfam Myb-like DNA-binding domain 22 72 IPR001005 -
Gma19g02081 241 Pfam Myb-like DNA-binding domain 78 121 IPR001005 -
Gma19g02081 241 PANTHER MYB TRANSCRIPTION FACTOR-RELATED 6 163 - -
Gma19g02081 241 Gene3D - 16 77 - -
Gma19g02081 241 SMART sant 21 74 IPR001005 -
Gma19g02081 241 SMART sant 77 125 IPR001005 -
Gma19g02081 241 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 73 127 IPR017930 -
Gma19g02081 241 Gene3D - 82 123 - -
Gma19g02081 241 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 6 163 IPR044676 GO:0003700|GO:0006355|GO:0043565
Gma19g02081 241 SUPERFAMILY Homeodomain-like 20 119 IPR009057 -
Gma19g02081 241 CDD SANT 82 121 IPR001005 -
Gma19g02081 241 ProSiteProfiles Myb-like domain profile. 73 123 IPR001005 -
Gma19g02081 241 ProSiteProfiles Myb-like domain profile. 17 72 IPR001005 -
Gma19g02081 241 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 72 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g02081 Gma-Chr19 49693349 49694331 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g02081 19 167 MYB Transcription Factor Family AT1G48000 64.430 2.57e-65 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma19g02081 Myb_DNA-binding 2e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g02081 K09422 - gmx:100777760 480.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g02081 19 49693349 49694331 Gma03g02043 03 46007458 46008716 GST
Gma19g02081 19 49693349 49694331 Gma10g00100 10 995057 996368 PCT
Gma10g00100 10 995057 996368 Gma19g02081 19 49693349 49694331 PCT