Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g02079 ATGGAGAGGAGTTTATCAGGAAGTAGTGAAGAGGAGATGTCAATAACGAAAGGTCCATGGACAGAGGAAGAGGATTCTGTTCTCTTCAATTACATCACTGTCCATGgggaaggtcactggaactctgtcgctcgctacacagGTCTAAAACGAACAGGCAAAAGCTGCAGATTAAGATGGTTAAACTACTTGCGTCCAAATGTTCGACGTGGGAACATAACCCTCGAAGAACAGCTCTTGATTCTTGACCTCCATTCCCGTTGGGGCAACAGGTGGTCGAAAATAGCTGAACATTTACCAGGAAGAACAGACAACGAGATAAAGAACTATTGGAGAACGAGAGTGGTAAAGCAGGCTAAGCAACTAAAGTGTGAGGTGAACAGCAAGCAATTCAGGGACACGTTGCGTTTTGTGTGGATGCCACGTATGTTAGAGCGGATCCAAGCTCAGGCCTCATCATCATCATCATCATCATCAGGCCAAGCCCACCAAACCACGTTAATCTCCAACGCTCAAGCACACAGTGACCCTTGCGGAGTCATGACGACCAACCCAAGTTTGTTGTCGGAGGTGTCATCATCAGCCCTTGATGCCCACGCGCCTTCTCTCTATGACTCTAGTGCGTCTTACAATCTAATGGGTGGTGGTAGTTCCTCATCGTATAGTGCAGAATATTGCTACTACTCGGACATAGCAGGAAATGGTTTTGGTGGTTCGGACTTGTGGACGGATGAAAATATTTGCTTTCTGCAACAGCTGCTCGCTGATCATGACTTGTCGTGA 783 0.4444 MERSLSGSSEEEMSITKGPWTEEEDSVLFNYITVHGEGHWNSVARYTGLKRTGKSCRLRWLNYLRPNVRRGNITLEEQLLILDLHSRWGNRWSKIAEHLPGRTDNEIKNYWRTRVVKQAKQLKCEVNSKQFRDTLRFVWMPRMLERIQAQASSSSSSSSGQAHQTTLISNAQAHSDPCGVMTTNPSLLSEVSSSALDAHAPSLYDSSASYNLMGGGSSSSYSAEYCYYSDIAGNGFGGSDLWTDENICFLQQLLADHDLS 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g02079 260 Gene3D - 74 115 - -
Gma19g02079 260 PANTHER MYB TRANSCRIPTION FACTOR-RELATED 7 199 - -
Gma19g02079 260 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 68 IPR017930 -
Gma19g02079 260 CDD SANT 74 113 IPR001005 -
Gma19g02079 260 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 69 119 IPR017930 -
Gma19g02079 260 SUPERFAMILY Homeodomain-like 14 111 IPR009057 -
Gma19g02079 260 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 7 199 IPR044676 GO:0003700|GO:0006355|GO:0043565
Gma19g02079 260 Pfam Myb-like DNA-binding domain 17 64 IPR001005 -
Gma19g02079 260 Pfam Myb-like DNA-binding domain 70 113 IPR001005 -
Gma19g02079 260 CDD SANT 19 64 IPR001005 -
Gma19g02079 260 ProSiteProfiles Myb-like domain profile. 12 64 IPR001005 -
Gma19g02079 260 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Gma19g02079 260 Gene3D - 16 69 - -
Gma19g02079 260 SMART sant 16 66 IPR001005 -
Gma19g02079 260 SMART sant 69 117 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g02079 Gma-Chr19 49683722 49685675 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g02079 4 256 MYB Transcription Factor Family AT2G47190 47.761 3.06e-81 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma19g02079 Myb_DNA-binding 1.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g02079 K09422 - gmx:100819467 506.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g02079 19 49683722 49685675 Gma19g02079 19 49683722 49685675 ECH
Gma19g02079 19 49683722 49685675 Gma03g02042 03 45999186 46000777 GST
Gma19g02079 19 49683722 49685675 Gma10g00101 10 1002995 1004327 PCT
Gma19g02079 19 49683722 49685675 Gma02g00094 02 972887 980662 PCT
Gma10g00101 10 1002995 1004327 Gma19g02079 19 49683722 49685675 PCT
Gma02g00094 02 972887 980662 Gma19g02079 19 49683722 49685675 PCT