Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gma19g02052 | ATGGCAGAGGTTGTCCTGCTAGTCGATGATTTGAAATTACTTTCTGCGAGTCCTCGTTGTAGAATTTGTCATGAAGAAGAGTTTGAAAGCGTAGAAACCTTGGAAGCACCTTGTGCTTGTTCTGGGACCGTTAAGTTTGCTCATAGAGATTGCATACAGAGATGGTGCAACGAAAAAGGAAATACAACCTGTGAAATATGTCTCCAGCAATATGAACCCGGATATACAGCTCCTCCGCCAAAGAAGTCTAAGATAAATGATGAAACAATGTCCATTAGGGAGGAGGAAGAACCGTCAAACGCAAGAATAGAGATTATGGTTGAAGGAGTGGAAATGGAAAGCGATTACTCTGAATGCAGTTCTGCCGCTGACAGAAGCGCGTCTTGCTGTCGATCACTTGCAATAGCTTTTACACTAGTCTTACTTGTAAGGCATCTTTTCGCAGTGCTCACATATGGAACGGAAGATTACCCATTTACACTACTAACTGTAATTATATTAAAGGCTAGCGGAATTATTATACCAATGTACATAGTTATTAAGATTATCGGAGCCATTCAGAACAGTATTCAGCACTATCAGGATTCTGACTATGACGAAGATGACGAAAATGATATACAGCATAATGTAAATTCAAGACATTTCTAG | 648 | 0.3997 | MAEVVLLVDDLKLLSASPRCRICHEEEFESVETLEAPCACSGTVKFAHRDCIQRWCNEKGNTTCEICLQQYEPGYTAPPPKKSKINDETMSIREEEEPSNARIEIMVEGVEMESDYSECSSAADRSASCCRSLAIAFTLVLLVRHLFAVLTYGTEDYPFTLLTVIILKASGIIIPMYIVIKIIGAIQNSIQHYQDSDYDEDDENDIQHNVNSRHF | 215 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gma19g02052 | 215 | SMART | ringv_2 | 19 | 68 | IPR011016 | GO:0008270 | |
Gma19g02052 | 215 | PANTHER | RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING | 1 | 204 | IPR033275 | - | |
Gma19g02052 | 215 | Pfam | RING-variant domain | 20 | 67 | IPR011016 | GO:0008270 | |
Gma19g02052 | 215 | CDD | RING_CH-C4HC3_MARCH | 20 | 67 | - | - | |
Gma19g02052 | 215 | SUPERFAMILY | RING/U-box | 18 | 72 | - | - | |
Gma19g02052 | 215 | ProSiteProfiles | Zinc finger RING-type profile. | 20 | 67 | IPR001841 | - | |
Gma19g02052 | 215 | PANTHER | AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED | 1 | 204 | - | - | |
Gma19g02052 | 215 | Pfam | Protein of unknown function (DUF3675) | 73 | 183 | IPR022143 | - | |
Gma19g02052 | 215 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 12 | 77 | IPR013083 | - | |
Gma19g02052 | 215 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 12 | 74 | IPR011016 | GO:0008270 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gma19g02052 | Gma-Chr19 | 49449994 | 49452281 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gma19g02052 | 9 | 67 | C3H Transcription Factor Family | AT2G37950 | 38.333 | 2.73e-06 | 44.7 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gma19g02052 | - | - | gmx:100802379 | 371.318 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Gma19g02052 | 19 | 49449994 | 49452281 | Gma19g02052 | 19 | 49449994 | 49452281 | ECH | |
Gma19g02052 | 19 | 49449994 | 49452281 | Gma03g02016 | 03 | 45772487 | 45775138 | GST | |
Gma19g02052 | 19 | 49449994 | 49452281 | Gma10g00129 | 10 | 1234567 | 1237565 | PCT | |
Gma19g02052 | 19 | 49449994 | 49452281 | Gma02g00125 | 02 | 1205906 | 1208609 | PCT | |
Gma10g00129 | 10 | 1234567 | 1237565 | Gma19g02052 | 19 | 49449994 | 49452281 | PCT | |
Gma02g00125 | 02 | 1205906 | 1208609 | Gma19g02052 | 19 | 49449994 | 49452281 | PCT |