Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g02052 ATGGCAGAGGTTGTCCTGCTAGTCGATGATTTGAAATTACTTTCTGCGAGTCCTCGTTGTAGAATTTGTCATGAAGAAGAGTTTGAAAGCGTAGAAACCTTGGAAGCACCTTGTGCTTGTTCTGGGACCGTTAAGTTTGCTCATAGAGATTGCATACAGAGATGGTGCAACGAAAAAGGAAATACAACCTGTGAAATATGTCTCCAGCAATATGAACCCGGATATACAGCTCCTCCGCCAAAGAAGTCTAAGATAAATGATGAAACAATGTCCATTAGGGAGGAGGAAGAACCGTCAAACGCAAGAATAGAGATTATGGTTGAAGGAGTGGAAATGGAAAGCGATTACTCTGAATGCAGTTCTGCCGCTGACAGAAGCGCGTCTTGCTGTCGATCACTTGCAATAGCTTTTACACTAGTCTTACTTGTAAGGCATCTTTTCGCAGTGCTCACATATGGAACGGAAGATTACCCATTTACACTACTAACTGTAATTATATTAAAGGCTAGCGGAATTATTATACCAATGTACATAGTTATTAAGATTATCGGAGCCATTCAGAACAGTATTCAGCACTATCAGGATTCTGACTATGACGAAGATGACGAAAATGATATACAGCATAATGTAAATTCAAGACATTTCTAG 648 0.3997 MAEVVLLVDDLKLLSASPRCRICHEEEFESVETLEAPCACSGTVKFAHRDCIQRWCNEKGNTTCEICLQQYEPGYTAPPPKKSKINDETMSIREEEEPSNARIEIMVEGVEMESDYSECSSAADRSASCCRSLAIAFTLVLLVRHLFAVLTYGTEDYPFTLLTVIILKASGIIIPMYIVIKIIGAIQNSIQHYQDSDYDEDDENDIQHNVNSRHF 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g02052 215 SMART ringv_2 19 68 IPR011016 GO:0008270
Gma19g02052 215 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 204 IPR033275 -
Gma19g02052 215 Pfam RING-variant domain 20 67 IPR011016 GO:0008270
Gma19g02052 215 CDD RING_CH-C4HC3_MARCH 20 67 - -
Gma19g02052 215 SUPERFAMILY RING/U-box 18 72 - -
Gma19g02052 215 ProSiteProfiles Zinc finger RING-type profile. 20 67 IPR001841 -
Gma19g02052 215 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 1 204 - -
Gma19g02052 215 Pfam Protein of unknown function (DUF3675) 73 183 IPR022143 -
Gma19g02052 215 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 77 IPR013083 -
Gma19g02052 215 ProSiteProfiles Zinc finger RING-CH-type profile. 12 74 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g02052 Gma-Chr19 49449994 49452281 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g02052 9 67 C3H Transcription Factor Family AT2G37950 38.333 2.73e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g02052 - - gmx:100802379 371.318
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g02052 19 49449994 49452281 Gma19g02052 19 49449994 49452281 ECH
Gma19g02052 19 49449994 49452281 Gma03g02016 03 45772487 45775138 GST
Gma19g02052 19 49449994 49452281 Gma10g00129 10 1234567 1237565 PCT
Gma19g02052 19 49449994 49452281 Gma02g00125 02 1205906 1208609 PCT
Gma10g00129 10 1234567 1237565 Gma19g02052 19 49449994 49452281 PCT
Gma02g00125 02 1205906 1208609 Gma19g02052 19 49449994 49452281 PCT