Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g02043 ATGGTAAGGGCTCCTTGTTGTGAGAAAGTGGGATTGAAGAAGGGAAGGTGGACAACGGAGGAGGATGAAATTTTGACCAAGTACATTATGGCCAATGGAGAAGGTTCGTGGAGATCATTGCCGAAAAATGCAGGATTGTTGAGATGCGGGAAGAGTTGCAGGCTAAGGTGGATTAACTATCTAAGAGCTGATCTCAAAAGAGGAAACTTTTCTGTTGAGGAGGAAAGTACCATTCTGAAGTTGCATGCTTCGTTTGGCAGCAGCTGGTCGTTGATAGCAAGTCATTTACCTGGAAGAACAGACAACGAGATAAAAAACTACTGGAACTCTCATTTGAGCAGAAAAATTTACACTTTCCATGGGAAAACAACTTCTAAAGGCATCATCACCCTACCTCCTCGGCGCAAACGTGGTAGAACCAGCCGCTGGGCCATGAAGAACAAAAACCAAAAGGGTAGTAGTAGTACACAACAACAACAACAACAAATTCATCATCATCTCAATAATGAAGTAGCAGTTCCTCTCCCTCCAAAACCCCCACTTGAGACCGAGAAATATTTGTCCACCAATATAATATTAATGGAGGAGCAAGTTGATGGGTCGAGCACTGCTAGTACAATAACCAATGATCATAAACATGAAAACACTACTACTATGTGTGTTGAAGGCGAGAAAGAAGAAATATTAAATGACGACATATGGGGGCCGTATGTTGAGGAAGTTATTAACGGGGGAGAGTTAGTGTTAAATTTTGATGATTTCATGGACCATTGCTGGCAGGAAGCAAGTGGGGTTTGGACCATTTCTGATGAACAAAGAGAGAGCAATATCAATATTGTGGTTGGGAATGAAAAAGTTGATGACGACATGTGTACGAACGTAATTATGTCGAGTGGGGATCATGATCGGTTGCATTCTTCCTCTTCCATTGCTTCGGACTTGGATCAAAACCTCCTCACTTGGCTGTGGGAAGATGAAGATTGGGAGAAGGATCTTCAGAGCCTTGGAGAGATTCATAGTGACAAATTAAAAGCTATGGTTGATTGGTTTCTCTCTTCAAGTTAA 1065 0.4207 MVRAPCCEKVGLKKGRWTTEEDEILTKYIMANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNFSVEEESTILKLHASFGSSWSLIASHLPGRTDNEIKNYWNSHLSRKIYTFHGKTTSKGIITLPPRRKRGRTSRWAMKNKNQKGSSSTQQQQQQIHHHLNNEVAVPLPPKPPLETEKYLSTNIILMEEQVDGSSTASTITNDHKHENTTTMCVEGEKEEILNDDIWGPYVEEVINGGELVLNFDDFMDHCWQEASGVWTISDEQRESNINIVVGNEKVDDDMCTNVIMSSGDHDRLHSSSSIASDLDQNLLTWLWEDEDWEKDLQSLGEIHSDKLKAMVDWFLSSS 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g02043 354 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Gma19g02043 354 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gma19g02043 354 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gma19g02043 354 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 331 - -
Gma19g02043 354 MobiDBLite consensus disorder prediction 145 164 - -
Gma19g02043 354 CDD SANT 69 112 IPR001005 -
Gma19g02043 354 CDD SANT 16 61 IPR001005 -
Gma19g02043 354 Gene3D - 11 67 - -
Gma19g02043 354 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gma19g02043 354 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gma19g02043 354 Gene3D - 69 116 - -
Gma19g02043 354 SMART sant 13 63 IPR001005 -
Gma19g02043 354 SMART sant 66 114 IPR001005 -
Gma19g02043 354 PANTHER MYB TRANSCRIPTION FACTOR 2 331 - -
Gma19g02043 354 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Gma19g02043 354 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gma19g02043 354 MobiDBLite consensus disorder prediction 127 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g02043 Gma-Chr19 49343738 49348316 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g02043 1 148 MYB Transcription Factor Family AT2G47460 67.702 3.12e-69 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma19g02043 Myb_DNA-binding 5e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g02043 K09422 - gmx:100817316 693.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g02043 19 49343738 49348316 Gma19g02043 19 49343738 49348316 ECH
Gma19g02043 19 49343738 49348316 Gma03g02009 03 45691973 45695753 GST
Gma19g02043 19 49343738 49348316 Gma10g00140 10 1326116 1330929 PCT
Gma19g02043 19 49343738 49348316 Gma02g00134 02 1299497 1303578 PCT
Gma10g00140 10 1326116 1330929 Gma19g02043 19 49343738 49348316 PCT
Gma02g00134 02 1299497 1303578 Gma19g02043 19 49343738 49348316 PCT