Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g02040 ATGTCTAATCATCATCACGTAGTTCAGACCTCGCCACCGAAACTATTCGGTTTCCCACTAACAGAGCAGGAGGAATTGAATTCAGATGCAGAAAGAAAATACGAGGTTGGAGAGGACAGAAAATTCAGATGCCACTACTGCAAACGAGTATTCGGAAACTCTCAGGCCTTAGGGGGCCACCAAAACGCCCACAAGAAAGAGCGTCAGAGGGCGAGGCGTTTCCAAATCCACACTCATAGACGCTCCATTGCAGCACCATCTTCTGCTTCTGTTCTCAACTCACATGCAATAATAAGATCAGTACCTTCAGTTACAGTTACTACGCTACCCTCCTCCATTTACTTACGAGGAGGCCCTCCTACTACTTCTTCTCTTCTACCCATCTTCCATCCTCGTCAACCCAATAACACTAAGCACTTCCCATCACGGCCCATTTTGATTCCTTCTTCCACCTACCACCGTACTAATTGCACTCCATCCTTTCCTTTTCAGCTTTATGCCTCACCCTCTGTACTGCAATCTGCTCCTAACGTCCGTGATTTTTCTGCTGAGAGCAGGGAAGTTGATGTCCATCTCAAATTATAA 585 0.4632 MSNHHHVVQTSPPKLFGFPLTEQEELNSDAERKYEVGEDRKFRCHYCKRVFGNSQALGGHQNAHKKERQRARRFQIHTHRRSIAAPSSASVLNSHAIIRSVPSVTVTTLPSSIYLRGGPPTTSSLLPIFHPRQPNNTKHFPSRPILIPSSTYHRTNCTPSFPFQLYASPSVLQSAPNVRDFSAESREVDVHLKL 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g02040 194 PANTHER ZINC FINGER PROTEIN 5 3 194 IPR044299 GO:0010090
Gma19g02040 194 Pfam C2H2-type zinc finger 42 67 - -
Gma19g02040 194 ProSiteProfiles Zinc finger C2H2 type domain profile. 42 69 IPR013087 -
Gma19g02040 194 SUPERFAMILY beta-beta-alpha zinc fingers 39 69 IPR036236 -
Gma19g02040 194 ProSitePatterns Zinc finger C2H2 type domain signature. 44 64 IPR013087 -
Gma19g02040 194 PANTHER ZINC FINGER PROTEIN 6-LIKE 3 194 - -
Gma19g02040 194 Coils Coil 20 40 - -
Gma19g02040 194 Gene3D Classic Zinc Finger 24 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g02040 Gma-Chr19 49331665 49332475 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g02040 12 78 C2H2 Transcription Factor Family AT5G06650 43.243 1.16e-15 70.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma19g02040 zf-C2H2_6 1.6e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g02040 - - gmx:100806818 400.593
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g02040 19 49331665 49332475 Gma03g02006 03 45683649 45684149 GST