Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gma19g02025 | ATGCCCCCCTTATTTTGCAGCTACAAAAGGGCTCTCCCTCTCTGGTTTTTTTCACTCACCAAAAAGACGAAAGAAGCAAGCATGTGTGGCGGAGCAATCATCGCAGATTTCATACCTCGGCAGCGTCCCCGCACCCTCACAGCCTCCGAACTCTGGCCCAAGCGCAGCGAACCTCAACCTCAACCTCCTCCTCCTCCAGTTAAGAGGCAGAGGAAAAACCTCTACAGAGGGATCAGGCAGCGGCCCTGGGGCAAATGGGCCGCGGAGATTCGCGATCCACGTAAAGGAGTTCGTGTCTGGCTTGGCACCTTCAACACCGCCGAAGAAGCCGCCAGAGCCTACGACAAAGAAGCCCGAAAAATCCGCGGCAAGAAAGCCAAAGTCAATTTCCCCAACGAGGACGACCCTCTGCCGCAATACGGATCTTGCAAGAGCCTCAACTTGGAGTTCGGTTACGATCTCAACCAAACAGGGCTTTTCCCTTCTTCTAACGCTGATGAGAATTGCGGGTCCCACGTGGCTTACTCCGTTACGGAAGCCAACAACAAAGTAGAGAAGCTTTCCGAGGAGCTTATGGCGTACGAGAATTTAATGAGGTTTTATCAGATTCCGGAAAACGTCGTTGGGGATTTGTGGGCCTTTCCTGACACCTCTCCACCTCTCTGA | 666 | 0.5315 | MPPLFCSYKRALPLWFFSLTKKTKEASMCGGAIIADFIPRQRPRTLTASELWPKRSEPQPQPPPPPVKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNEDDPLPQYGSCKSLNLEFGYDLNQTGLFPSSNADENCGSHVAYSVTEANNKVEKLSEELMAYENLMRFYQIPENVVGDLWAFPDTSPPL | 221 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gma19g02025 | 221 | MobiDBLite | consensus disorder prediction | 49 | 73 | - | - | |
Gma19g02025 | 221 | PRINTS | Ethylene responsive element binding protein signature | 75 | 86 | IPR001471 | GO:0003700|GO:0006355 | |
Gma19g02025 | 221 | PRINTS | Ethylene responsive element binding protein signature | 97 | 113 | IPR001471 | GO:0003700|GO:0006355 | |
Gma19g02025 | 221 | SMART | rav1_2 | 74 | 137 | IPR001471 | GO:0003700|GO:0006355 | |
Gma19g02025 | 221 | Gene3D | AP2/ERF domain | 74 | 132 | IPR036955 | GO:0003700|GO:0006355 | |
Gma19g02025 | 221 | Pfam | AP2 domain | 75 | 123 | IPR001471 | GO:0003700|GO:0006355 | |
Gma19g02025 | 221 | PANTHER | DNA-BINDING DOMAIN | 67 | 142 | IPR044808 | GO:0003700|GO:0009873 | |
Gma19g02025 | 221 | ProSiteProfiles | AP2/ERF domain profile. | 74 | 131 | IPR001471 | GO:0003700|GO:0006355 | |
Gma19g02025 | 221 | CDD | AP2 | 75 | 132 | IPR001471 | GO:0003700|GO:0006355 | |
Gma19g02025 | 221 | Coils | Coil | 177 | 197 | - | - | |
Gma19g02025 | 221 | PANTHER | EREBP TRANSCRIPTION FACTOR | 67 | 142 | - | - | |
Gma19g02025 | 221 | SUPERFAMILY | DNA-binding domain | 74 | 132 | IPR016177 | GO:0003677 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gma19g02025 | Gma-Chr19 | 49205807 | 49206793 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gma19g02025 | 28 | 218 | AP2-EREBP Transcription Factor Family | AT2G47520 | 48.000 | 6.74e-51 | 161 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | AP2/ERF-ERF | Gma19g02025 | AP2 | 8.8e-13 | CL0081 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gma19g02025 | K09286 | - | gmx:100527371 | 395.201 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Gma19g02025 | 19 | 49205807 | 49206793 | Gma19g02025 | 19 | 49205807 | 49206793 | ECH |