Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g02020 ATGCCAGCAACCAACCACCCTATTTATCCACTTCAGACTTCACACTCAACCAAATCACAGTATCACTTACCGtcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttctatATATATATATATATATACCATGTATAGCCCCATTAGCAGAAAAAAACCACCAATGGAGTCTCACGTAGACACCATTCTCTCTGCAATTTTTGTTCTACTCCTTTCTTCGTTAACCCATTTCAGCATCACCGCAAATGCAACAAGAACACCCCAAGAAAACAGCCTCCATTTCCAAGTAGCAAACTCCACATGCGAGGGAACACTCTACTCCGACCTCTGTGTCTCAACCCTTGCCTCATTCCCAGATCTCACCTCAAAAACCCTCCCACAAATGATACGCTCTGTCGTGAACCACACAATATACGAGGTCACATTGTCGGCCTCCAACTGCAGCGGCCTCCGAAGGAACCTCCCGAAACTCGACAAACTCGAACAGAGAGCCCTCGACGACTGTCTCAATCTCTTCGACGACACCGTTTCGGAGCTCGAAACCACCATCGCGGATCTCTCACAGAGCACAATAGGACCGAAGCGTTACCACGACGCACAGACTTTGTTGAGTGGCGCAATGACCAACTTGTACACGTGTCTTGATGGCTTTGCGTACAGTAAAGGGCACGTGAGGGACAGGTTTGAGGAGGGGCTGTTGGAGATTTCGCATCACGTTAGTAACTCGCTCGCCATGCTGAAGAAATTGCCAGCAGGAGTGAAGAAATTGGCGTCCAAGAATGAGGTTTTCCCTGGATATGGTAAGATCAAAGACGGCTTTCCAACGTGGCTATCAACCAAGGATAGAAAATTGCTTCAGGCTGCTGTGAATGAAACAAACTTCAATCTTCTTGTGGCCAAAGATGGCACTGGCAACTTCACCACCATTGCCGAAGCAGTGGCTGTGGCTCCCAACTCCAGCGCAACTAGATTTGTGATACACATAAAAGCCGGGGCATACTTCGAGAATGTGGAGGTAATCAGGAAGAAGACCAATCTGATGTTCGTCGGAGATGGGATTGGAAAGACTGTTGTGAAGGCCAGTAGGAATGTTGTGGATGGCTGGACCACTTTCCAATCAGCCACTGTTGctgtggttggagacggattcatagcaaagggtataacctttgaaaattctgctgggccaagcaaacaccaagccgtggccctaaggagtggttctgatttctcagccttctataaatgcagcttcgttgcctaccaagatactctctatgtccactccctgcgccaattctaccgcgattgtgacgtttatggcacagtcgacttcatcttcggcaatgcagcaacagtgctccagaactgcaacttgtacgcacgcaagcccaatgaaaaccaaaggaacttgttcactgcacaaggaagagaagaccctaaccaaaacaccggcatttccatcttgaactgcaaggttgcagcagctgctgatttaatcccggtcaaatctcagttcaagaactacttgggtcgtccttggaagaagtattcgagaactgtttatcttaattcttacatggaggatctgatagaccccaaagggtggttggagtggaatggcacgtttgcattggatacgttgtattatggagagtacaacaataggggtcccggttcaaacacaagtgcaagagtTACGTGGCCTGGTTATAGGGTTATCAAGAACGCCACTGAGGCAAACCAGTTCACAGTTCGCAATTTCATTCAAGGGAATGAATGGTTGAGTTCCACCGACATTCCATTCTTCTCTGATTTCAGTTGA 1872 0.3104 MPATNHPIYPLQTSHSTKSQYHLPSSSSSSSSSSSSSSSSSSSSSSSSSSSSIYIYIYTMYSPISRKKPPMESHVDTILSAIFVLLLSSLTHFSITANATRTPQENSLHFQVANSTCEGTLYSDLCVSTLASFPDLTSKTLPQMIRSVVNHTIYEVTLSASNCSGLRRNLPKLDKLEQRALDDCLNLFDDTVSELETTIADLSQSTIGPKRYHDAQTLLSGAMTNLYTCLDGFAYSKGHVRDRFEEGLLEISHHVSNSLAMLKKLPAGVKKLASKNEVFPGYGKIKDGFPTWLSTKDRKLLQAAVNETNFNLLVAKDGTGNFTTIAEAVAVAPNSSATRFVIHIKAGAYFENVEVIRKKTNLMFVGDGIGKTVVKASRNVVDGWTTFQSATVAVVGDGFIAKGITFENSAGPSKHQAVALRSGSDFSAFYKCSFVAYQDTLYVHSLRQFYRDCDVYGTVDFIFGNAATVLQNCNLYARKPNENQRNLFTAQGREDPNQNTGISILNCKVAAAADLIPVKSQFKNYLGRPWKKYSRTVYLNSYMEDLIDPKGWLEWNGTFALDTLYYGEYNNRGPGSNTSARVTWPGYRVIKNATEANQFTVRNFIQGNEWLSSTDIPFFSDFS 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g02020 623 SMART PMEI_2 108 261 IPR006501 GO:0004857
Gma19g02020 623 PANTHER PECTINESTERASE 83 620 - -
Gma19g02020 623 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 114 265 IPR035513 -
Gma19g02020 623 SUPERFAMILY Pectin lyase-like 310 620 IPR011050 -
Gma19g02020 623 PANTHER PECTINESTERASE 83 620 - -
Gma19g02020 623 Pfam Pectinesterase 312 608 IPR000070 GO:0030599|GO:0042545
Gma19g02020 623 TIGRFAM PME_inhib: pectinesterase inhibitor domain 80 265 IPR006501 GO:0004857
Gma19g02020 623 ProSitePatterns Pectinesterase signature 2. 455 464 IPR033131 -
Gma19g02020 623 Pfam Plant invertase/pectin methylesterase inhibitor 114 261 IPR006501 GO:0004857
Gma19g02020 623 Gene3D Invertase/pectin methylesterase inhibitor family protein 111 267 IPR035513 -
Gma19g02020 623 MobiDBLite consensus disorder prediction 7 49 - -
Gma19g02020 623 Gene3D - 306 622 IPR012334 -
Gma19g02020 623 MobiDBLite consensus disorder prediction 1 49 - -
Gma19g02020 623 CDD PMEI-like_3 115 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g02020 Gma-Chr19 49168732 49173987 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g02020 138 618 Carbohydrate Esterase AT4G02300 56.122 0.0 562
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g02020 K01051 - gmx:100813592 1197.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g02020 19 49168732 49173987 Gma19g02020 19 49168732 49173987 ECH
Gma10g00164 10 1529009 1533308 Gma19g02020 19 49168732 49173987 PCT
Gma02g00159 02 1515643 1520376 Gma19g02020 19 49168732 49173987 PCT