Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gma19g02015 | ATGATAATTAAGCGGAGTTTGAAAACTGGACTTCAGAAGCGGAAACAGTATAAGCCAGAGAACTGCGATAATCTCGCGATTCAGAAGGAGCCGAAGCCAGAAAACTGCGATAATTCCGCGGTTCAGAAGAAGCAGAGAGTAAATGAGGTTTCTTCTGCTGAAGGAGGAGCCTCTGGATCCTGTGAGGTTCAGTCCAATTCAAATTCCGTGGACTCAAATGGCACAATTCAAGGATTGGTCCCACAATCAGAAGAGGTTCAACCACCCCGGCCTTCCAGAGGTCGAGCTAAGAAGCTTCCCAGAAGGTTTAGTGATTCTGTTTTTTACGAACGCTTCGGGCTTGTAGACGAGAATAAGAATACTTTGCAATACATTGCTGACAAGAGAAATCAAAGAGATTCTCCTTGTTCTCCAAATTCTATTGAGTCCGGCGATTTCGAGTTCTCGGTTAAGACTGTTAAGAAGACGGTTAACGGGGGTCGTAAGTTATTGGTTAAAGAAAAGAGTAATGATGCCGCTGGACATAGTTCCAATTCTGAGGGTGTGGATGGAAACGGTAAAAAGAAAGACATTTTCAAATTAGATGATTTTGTTTTGGGTGACATAGTTTGGGCAAAATGTGGGAAGAAGCATCCTGCTTGGCCTGCTGTAGTCATTGATCCCCTCTTGCAAGCTCCCAAATCCGTCTTAAGCTGTTGTGTTCCTGGTGCACTTTGCGTCATGTTTTTCGGCTATTCCAAAATTGGAAAGCAAAGGGACTATGCGTGGGTGAAGCAGGGGATGATATTTCCGTTCTTGGAATTCATGGACAGATTCCCCGGGCAGACCCAACTATACAGAGGTAAAGCAAGTGACTTCCACGCAGCAATGGATGAGGCATACTTGGTAGAAAACGGCATTTTTGAGGTACAATTGGGAGCTGAGCAAAATATGGATGGTGTGGATTCCTGTGTTAACCAGGAATGTGCTGATCAAGACCAGGATACAATATCTTGTGCTGGCTGTGGTTTGATGTCGCCATGCAAAACCATGAAGAAGATTAAGGATTCAAGCTGTGCTACTCAGCACTTTTGCAAGCCTTGTGCAAAGTTAATAAAATCGAGACAATATTGTGGCATTTGCAAAAAGATTTGGCACCATTCAGATGGTGGGAATTGGGTATGCTGTGATGGTTGTAATGTTTGGGTGCATGCTGAGTGTGACAAAATTTCCAGCAAACTTTTCAAGGATCTGGAAAATGCAGATTACTATTGCCCCGATTGCAAGGGAAAATTCAATTATGAATCATCAACATCACAAACATACAAGTCAAAAAATATATCAATGGAGACAGGCAAAAAACCTGCAATACCAGAAAATTTAGTGGTCTTATGCAATGGCTTGAAAGGAATCTATGTTCCAAAGGATCATATGATTATCTGCAAGTGTTGCTTGTGTGGTTCAAGGACGCATACACTTACCGAATGGGAAAGACATGCAGGTTCCAAAGCCAGAAAATGGAGATATAGTGTGAAAGTAGAAAGCACAATGCAACCGCTCAAAGAATGGATCGATGAACACAATTCCGGAGCTGGAACTTCTCTGCAGTTAGATCAGCAGCAAATACTCTCCTTTTTGCAAGagaaatatgagccagtttatgcaaactggataacagaaagatgtgccatttgcagatgggttgaagattgggaagataacaaaattatcatctgtaacagGTGCCAAATTGCTGTCCACCAAGAATGCTACGGGGCAAAGAATGTTCAGGACTTTACTTCCTGGGTTTGTAGAGTCTGTGAAAATCCTGATGTTGAGAGAGAGTGTTGCCTTTGCCCAGTAAAAGGCATGTCATTTACATTTAGTGGGGCTCTGAAGCCAACAGATGTTGAGATGTTGTGGGTTCATGTCACGTGCGCTTGGTTTCGGCCTGAAGTTATTTTCCAAAATGACAAGGCAATGGAACCAGCCTCTGGAATCCTCAAGATTCCTCCTAATTCCTTTTCAAAGACTTGCGTGATCTGTAAACAAAGCCACGGTTCCTGTACAAGTTGTTGCAAGTGTGCTACATATTTTCATGTAATGTGCGCGTCAAGAAAGGGATATAGCATGGAATTGCATTCGACAGAAAAGAATGGGACTCTAATAACGAATAAGCTAATATATTGTGCAATGCACAGGGTCCCAAACCCAGAATCAGGTCTGGTTGTACATACACCCAATGAGGTATTCTCATCGACAACTTCACTTCAAAATCATCCGGGGAGCATCAGGAGATCAAGGCTGGTTTCATCAGAGATTGTAGTACTTCCCGAATCTGCAAACTCTGAAATTAATGAGATTGAACCACTGTCTGCAGCAAGATGTCGTGTGTTCATAAGGCCTTCCCGTAAGAAGGATGGAGTGCCAATAATTCACTTGCTTGGGGGGCCAAACCTTCACTCTTTAAGTGCAATAACTCAATTGAACAGCAATAAGGATGCTCAAGTATTTTCTTCTCTTAAGGAGCGTCTTCACCATTTACAGAAAACAGAGAACCAAAAAGTTTGCTTAGGGAAATCAGGTATTCATGGATGGGGCCTCTTTGCTCGTAGAGATCTGGAAGAAGGAGAAATGGTTGTTGAATATCGTGGCGAGCAGTTACGGCGTAGTATTACTGACCTAAGGGAAGCACAGTATCGTTCAGAAGGCAAAGATTGTTATTTCTTTAAGATTAATGAGGAAGTGGTGATTGACGCAACGGATAAGGGGAATATTGCACGTTTAATAAACCATTCTTGCATGCCTAACTGCTTTGCAAGGATTGTGCCTTCGGGTGATCAGAAGAACCGGATTGTTCTTATTGCCAAGACCAATGTTTCAGCTGGTGAAGAACTAACGTATAATTATTCGTTCGACGATGAGCGGGATGAAGAAAAGGTTCCCTGTCGCTGTAAAGCCCCTAACTGTAGCGGATTTATGAACTAG | 2967 | 0.4142 | MIIKRSLKTGLQKRKQYKPENCDNLAIQKEPKPENCDNSAVQKKQRVNEVSSAEGGASGSCEVQSNSNSVDSNGTIQGLVPQSEEVQPPRPSRGRAKKLPRRFSDSVFYERFGLVDENKNTLQYIADKRNQRDSPCSPNSIESGDFEFSVKTVKKTVNGGRKLLVKEKSNDAAGHSSNSEGVDGNGKKKDIFKLDDFVLGDIVWAKCGKKHPAWPAVVIDPLLQAPKSVLSCCVPGALCVMFFGYSKIGKQRDYAWVKQGMIFPFLEFMDRFPGQTQLYRGKASDFHAAMDEAYLVENGIFEVQLGAEQNMDGVDSCVNQECADQDQDTISCAGCGLMSPCKTMKKIKDSSCATQHFCKPCAKLIKSRQYCGICKKIWHHSDGGNWVCCDGCNVWVHAECDKISSKLFKDLENADYYCPDCKGKFNYESSTSQTYKSKNISMETGKKPAIPENLVVLCNGLKGIYVPKDHMIICKCCLCGSRTHTLTEWERHAGSKARKWRYSVKVESTMQPLKEWIDEHNSGAGTSLQLDQQQILSFLQEKYEPVYANWITERCAICRWVEDWEDNKIIICNRCQIAVHQECYGAKNVQDFTSWVCRVCENPDVERECCLCPVKGMSFTFSGALKPTDVEMLWVHVTCAWFRPEVIFQNDKAMEPASGILKIPPNSFSKTCVICKQSHGSCTSCCKCATYFHVMCASRKGYSMELHSTEKNGTLITNKLIYCAMHRVPNPESGLVVHTPNEVFSSTTSLQNHPGSIRRSRLVSSEIVVLPESANSEINEIEPLSAARCRVFIRPSRKKDGVPIIHLLGGPNLHSLSAITQLNSNKDAQVFSSLKERLHHLQKTENQKVCLGKSGIHGWGLFARRDLEEGEMVVEYRGEQLRRSITDLREAQYRSEGKDCYFFKINEEVVIDATDKGNIARLINHSCMPNCFARIVPSGDQKNRIVLIAKTNVSAGEELTYNYSFDDERDEEKVPCRCKAPNCSGFMN | 988 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gma19g02015 | 988 | Pfam | PHD-zinc-finger like domain | 608 | 726 | - | - | |
| Gma19g02015 | 988 | CDD | PHD_TCF19_like | 371 | 421 | - | - | |
| Gma19g02015 | 988 | SMART | set_7 | 847 | 970 | IPR001214 | GO:0005515 | |
| Gma19g02015 | 988 | Pfam | PHD-finger | 567 | 601 | - | - | |
| Gma19g02015 | 988 | SMART | PHD_3 | 370 | 422 | IPR001965 | - | |
| Gma19g02015 | 988 | SMART | PHD_3 | 671 | 727 | IPR001965 | - | |
| Gma19g02015 | 988 | SMART | PHD_3 | 554 | 601 | IPR001965 | - | |
| Gma19g02015 | 988 | MobiDBLite | consensus disorder prediction | 22 | 99 | - | - | |
| Gma19g02015 | 988 | ProSitePatterns | Zinc finger PHD-type signature. | 555 | 600 | IPR019786 | - | |
| Gma19g02015 | 988 | ProSiteProfiles | Extended PHD (ePHD) domain profile. | 606 | 727 | IPR034732 | - | |
| Gma19g02015 | 988 | Pfam | PHD-finger | 370 | 423 | IPR019787 | - | |
| Gma19g02015 | 988 | Gene3D | - | 191 | 298 | - | - | |
| Gma19g02015 | 988 | SUPERFAMILY | FYVE/PHD zinc finger | 368 | 426 | IPR011011 | - | |
| Gma19g02015 | 988 | ProSiteProfiles | Zinc finger PHD-type profile. | 552 | 603 | IPR019787 | - | |
| Gma19g02015 | 988 | SMART | PWWP_4 | 197 | 266 | IPR000313 | - | |
| Gma19g02015 | 988 | Pfam | SET domain | 858 | 963 | IPR001214 | GO:0005515 | |
| Gma19g02015 | 988 | PANTHER | HISTONE-LYSINE N-METHYLTRANSFERASE ATX3 | 1 | 988 | - | - | |
| Gma19g02015 | 988 | ProSiteProfiles | SET domain profile. | 847 | 964 | IPR001214 | GO:0005515 | |
| Gma19g02015 | 988 | Pfam | PWWP domain | 200 | 293 | IPR000313 | - | |
| Gma19g02015 | 988 | SUPERFAMILY | Tudor/PWWP/MBT | 196 | 302 | - | - | |
| Gma19g02015 | 988 | ProSiteProfiles | PWWP domain profile. | 199 | 268 | IPR000313 | - | |
| Gma19g02015 | 988 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 549 | 603 | IPR013083 | - | |
| Gma19g02015 | 988 | MobiDBLite | consensus disorder prediction | 38 | 82 | - | - | |
| Gma19g02015 | 988 | PANTHER | PHD FINGER PROTEINS | 1 | 988 | - | - | |
| Gma19g02015 | 988 | CDD | SET_SETD1-like | 836 | 983 | - | - | |
| Gma19g02015 | 988 | ProSiteProfiles | Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. | 12 | 988 | IPR025780 | - | |
| Gma19g02015 | 988 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 364 | 427 | IPR013083 | - | |
| Gma19g02015 | 988 | CDD | PHD_ATX3_4_5_like | 554 | 600 | IPR042011 | - | |
| Gma19g02015 | 988 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 604 | 728 | IPR013083 | - | |
| Gma19g02015 | 988 | SUPERFAMILY | FYVE/PHD zinc finger | 553 | 614 | IPR011011 | - | |
| Gma19g02015 | 988 | Gene3D | SET domain | 820 | 988 | IPR046341 | - | |
| Gma19g02015 | 988 | ProSiteProfiles | Post-SET domain profile. | 972 | 988 | IPR003616 | - | |
| Gma19g02015 | 988 | ProSiteProfiles | Zinc finger PHD-type profile. | 368 | 424 | IPR019787 | - | |
| Gma19g02015 | 988 | SUPERFAMILY | SET domain | 841 | 985 | IPR046341 | - | |
| Gma19g02015 | 988 | SMART | PostSET_3 | 972 | 988 | IPR003616 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gma19g02015 | Gma-Chr19 | 49130302 | 49138307 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gma19g02015 | 487 | 726 | C2H2 Transcription Factor Family | AT3G14740 | 27.778 | 3.76e-19 | 88.2 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TR | PHD | Gma19g02015 | zf-HC5HC2H_2 | 1.3e-25 | CL0390 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gma19g02015 | - | - | gmx:100811960 | 2034.22 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Gma19g02015 | 19 | 49130302 | 49138307 | Gma03g01984 | 03 | 45507618 | 45515675 | GST |