Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g02006 ATGAGTAGACGCTCGAGCAGAACTGTCTACGTTGGGAATCTACCCGGTGATATCCGTGAAAGAGAAGTTGAAGATTTGTTTCTGAAGTACGGACACATAACACACATCGACCTAAAGGTTCCCCCAAGACCACCTGGTTATGCATTTGTAGAGTTTGAAGATGCTCAAGATGCTGAGGATGCAATTCGTGGTCGTGATGGCTATGATTTTGATGGCCACCGGTTACGGGTGGAGCCTGCCCATGGTGGGCGTGGTCATTCATCCTCAAAAGATCGGCACAATAGTCACAGCAATGGCCGAGGTGGACGTGGGGTATCTAGGCGCTCTGAATATCGTGTTCTAGTCACTGGATTGCCCTCTTCGGCATCCTGGCAGGATCTTAAGGATCACATGCGCAAGGCAGGGGATGTTTGCTTTTCTCAAGTTTTTCATGATGGAAGGGGTACTACCGGTATTGTGGATTACACAAATTATGATGATATGAAATATGCTATTAAGAAGCTTGATGACTCTGAGTTCCGGAATGCATTTTCCAAGGGATATGTTCGGGTGAGGGAATATGATTCAAGGCGGGATTCTTCTAGAAGTCCTAGTCATGGCCCATCTCATTCTAGAGGAAGGAGCTATAGCCGCAGTCGTAGCCGTAGCCATAGTTACAGTCGGGACCGGAGCCAAAGCaaatctccaaaaggaaagtcttcacagcgttcacctgctaaatctccaaaaggaaagtcttcacagcgttcacctgctaaatctccaTCAAGATCTCCCTCTCGTTCTCGCTCAAGGTCAAGGTCCCGTTCGTTATCAGGATCACGGTCCAGGTCCAGGTCTCCATTGCCTCCGCGTAATAAAAGCCCCAAAAAACGCAGTGCTAGCAGGAGTCCAAGTAGGAGCAGGAGCAGGAGCAAGAGTTTGTCTCGGTAA 933 0.4437 MSRRSSRTVYVGNLPGDIREREVEDLFLKYGHITHIDLKVPPRPPGYAFVEFEDAQDAEDAIRGRDGYDFDGHRLRVEPAHGGRGHSSSKDRHNSHSNGRGGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSKGYVRVREYDSRRDSSRSPSHGPSHSRGRSYSRSRSRSHSYSRDRSQSKSPKGKSSQRSPAKSPKGKSSQRSPAKSPSRSPSRSRSRSRSRSLSGSRSRSRSPLPPRNKSPKKRSASRSPSRSRSRSKSLSR 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g02006 310 MobiDBLite consensus disorder prediction 230 259 - -
Gma19g02006 310 Gene3D - 2 110 IPR012677 -
Gma19g02006 310 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 3 289 - -
Gma19g02006 310 SMART rrm1_1 112 185 IPR000504 GO:0003723
Gma19g02006 310 SMART rrm1_1 8 78 IPR000504 GO:0003723
Gma19g02006 310 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 189 IPR000504 GO:0003723
Gma19g02006 310 MobiDBLite consensus disorder prediction 73 107 - -
Gma19g02006 310 Gene3D - 111 188 IPR012677 -
Gma19g02006 310 PANTHER PRE-MRNA-SPLICING FACTOR SF2-LIKE PROTEIN 3 289 - -
Gma19g02006 310 MobiDBLite consensus disorder prediction 73 110 - -
Gma19g02006 310 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Gma19g02006 310 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 175 IPR000504 GO:0003723
Gma19g02006 310 MobiDBLite consensus disorder prediction 215 229 - -
Gma19g02006 310 MobiDBLite consensus disorder prediction 284 299 - -
Gma19g02006 310 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Gma19g02006 310 MobiDBLite consensus disorder prediction 186 310 - -
Gma19g02006 310 CDD RRM2_SF2_plant_like 111 186 - -
Gma19g02006 310 SUPERFAMILY RNA-binding domain, RBD 5 175 IPR035979 GO:0003676
Gma19g02006 310 CDD RRM1_SF2_plant_like 8 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g02006 Gma-Chr19 49057379 49063253 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g02006 3 173 Eukaryotic Initiation Factors Gene Family AT4G34110 23.295 3.46e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g02006 K12890 - gmx:100796900 397.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g02006 19 49057379 49063253 Gma19g02006 19 49057379 49063253 ECH