Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g02003 atgtcattggcatcatcttcaacctggttaacatccctctcatgtgcattccctgagaaacaaacctcagggtacacgtttgtctcaactctgcttcaatggtttgagtttattttcctctcaccttgtcctcagagagctatattgtctttcattgatgtcgtcctcctcttctttctctttgtctttgctgtcaccaagttctggaaaaggtccaccaacctcaacgaaccactcatcagaaataacaataacatatccattttcttgactacgtggtttaagctaaccttaactgtggcgattctgttgactctagtttacacggttgctagtgttcttgctttcagcagttcctctgaggtgccgtggaaccaagttgatgaggtgttttggttagtccagaccataacacacgcggtgcttgtcgtcttgatcattcacgagaaaagatttgaagccgttaaacaccctctgttggtgagactttattggattgcgaatttctttgttatttctctgttcgctgtttctgcggttatacgtttggtctccgtggacgtggatggaaccataaactttaaggtgaatgacgtggtgtctttcatttcactccctctgtccttgtttcttctttttgttgcggttaaaggatccactggcattgttattccgacagaagaaacacgaccacttcttgaggaggaaactaagttatacgatggtggtgatgagacagaatccgaggttactggcttcgcttcagcttctatattatccaaggcattttggagttggataaaccccttgttgcgtaaagggtacaagtccgcgctgaagattgatgagattccaacgctttctccagagcatagagctgagagaatgtcatctatttttgaatcgaagtggcctaaatcaaacgagaggtcgaagcatccggttagaatcactttgcttcggtgcttttggaaggagttagccttcaatgctttccttgcaattattaggctctgcgtcatgtttgtggggccggttctcatacaaagttttgttgatttcacatcagggaagagaagctctgaatacgaaggatattacctcgtgttgattcttctcgtttctaagttcattgaagtcttggctactcatcatttaaacttccaagctcagaagctagggacgcttttacggtcaactcttatcccttctttgtataaaaaggggttaatgctatcattctctgctcggcaggatcatgggatagggactattgtgaattacatggctgttgatacccagcaactctcggacatgatgcttcagttcaatgctgtgtggatcatgccgtttcaagttgccattggcatgtttctgctttacaattgtctaggtgcctcatccgtcaccgcgtttctcggtcttcttggtgtttttgtgtttgctgtgattggtacccgtaggaacaaccacttccaatacaatgtcatgaggaaccgtgattctagaatgaaggctgtgaatgagatgcttaattacatgcgtgtgatcaagttccaggcctgggaggaacatttcagccagagaatcatgggattccgtgagaccgagtatgggtggctctccaagttgatgttcacaatttgtggcaatattgttgtgatgtggagcacgccgctgttggtgtcaactatcacatttggtacagctattttgctgggagttcaacttgacgcggccacggtgttcaccacaacaactgtgttcaagatattgcaggagcctattaggacattcccacagtctatgatatctctctcacaagcatttatatcactggagaggttagacaggttcatgttgagcagagaattgttgggtgattcagttgagagagaggaaggctgtggtggaaaaacagcagtggaaatcatagatgggacttttagttgggatgatgataacatgcagcaggacttgaaaaatgttaatctggagatcaaaaagggagagcttactgcaattgttgggactgtagggtcaggaaagtcctctctcctcgcatcaattcttggagagatgcgtaagatttctggaaaggtccgggtttgtgggaatgttgcctatgttgcacaaacatcttggattcagaatggaactattgaagagaacattctctttggtttaccaatggacagacggaggtacaatgaagttatcagggtgtgttgtttggagaaagatttggaaatgatggattatggggatcaaacagaaattggagagcgtggtatcaaccttagtggaggccagaagcagcgtatacaacttgccagggctgtatatcaagactgtgatatatatcttcttgatgatgtctttagtgctgttgatgctcataccggttctgaaatatttaagGAATGCGTGAGGGGAGCTCTAAAAGGCAAGACCATTATTCTTGTAACGCACCAAGTAGATTTCCTACATAATGTGGATCAAATATTGGTGACGAGGGACGGTATGATAGTTCAATCAGGGAAATACGATGAATTATTAGATTCTGGAATGGATTTTAAAGCTCTGGTAGTTGCACATGAGACCTCCATGGCTCTAGTAGAGCAGGGTCAGGGTGTGGTCATGCCTGGTGAAAATTTGAATAAACCAATGAAATCTCCTGAGGCAAGAAATTCTGGTGAAAGCAATTCTCTTGACCGGCCTGTGTCAAGCAAGAAAAGTTCTAAACTCATCAAAGAAGAGGAGAGAGAAACCGGCAAAGTGAGCTTACATATCTATAAACTCTACTGCACTGAGGCTTTTGGGTGGTGGGGCATTACAGTAGTATTGATTTTTTCTTTGTTATGGCAAGCGTCTATGATGGCAAGTGATTATTGGCTGGCATATGAAACCTCGGAAGAACGTGCTAAAATGTTTAACCCTTCTCTGTTCATTTCCATCTATGCAATTATTACTGCTGTTTCAATTATTTTGGTAGTGATAAGATCCTACATCTTTACACTCTTGGGGCTAAAGACAGCACAAATTTTCTTCACACAAATTCTTCGTAGCATCTTGCGTGCGCCCATGTCCTTCTTTGACACTACGCCATCTGGGAGAATTCTAAGTAGGgcatccactgatcagaccaatgttgatgtccttctccccttgttcacgggaattgttattgctatgtacattacagtgctcagcatcttgatcatcacctgtcaaaattcttggccaacatcgtttttgataattcctcttatttggttgaatatttggtaccggggttactatcttgcaacatctcgcgaattaactcgcttagattcaattaccaaagcaccagttattcatcacttctctgaaagcattgcaggggtcatgacaattcgctcattcagaaagcaaaagaatttttgtgaagaaaatctcaaacgggtgaatgataatttgcgtatggatttccacaactatagttctaatgtgtggttgggagtacgcttagagttgcttggaagctttgtcttttgcatttctgcaatgttcatgatcatcttacccagcagtatcattaagccagAAAATGTTGGTTTATCTCTCTCTTATGGGTTGTCCTTAAATGCTAGCTTGTTCTGGGCCGTATTCATGAGCTGTTTCATCGAAAACAAGATGGTATCTGTTGAGAGGATAAAGCAATTTACAAATATTCCATCAGAACCAGCATGGAATATCAAGGATCGTATGCCTCCTTCAAATTGGCCAAGTCAAGGCAATGTAGATATCAAAGACTTGCAGGTCAGATATCGTCTAAACACTCCTCTGGTTCTTAAAGGCATTACTTTAAGCAttagtggaggtgaaaaggttggtgttgttggtcgaactgggagcggaaagtcaactttaattcaagtattctttaggctggtggaaccttcacgagggaaaataataattgatggtattgacatatccgctttggggcttcatgatcttagatcacggtttggtatcattcctcaggagccggtgctttttgaaggaactatcagaagcaacattgatcccattggacagtatacagatgaagaaatatggaagagcttggaacggtgtcaactaaaagaggttgttgctactaagcctgaaaagcttgactctttagtggtggataatggagagaactggagtgttgggcagagacagttgctttgtctagggagggtcatgcttaagagaagtcgactcttgtttatggatgaggcaactgcttctgttgattctcaaaccgatggtgtggttcagaagatcattagagaggactttgcagcatgtaccatcattagcattgctcacagaatacccacagtcatggactgtgacagagttttagtagtagatgcagggcgagccaaagaatttgataagccctccaacttgcttcagaggcaatctctctttggggcattagttcaagagtatgccaatcgctccactgaactataa 4515 0.0877 MSLASSSTWLTSLSCAFPEKQTSGYTFVSTLLQWFEFIFLSPCPQRAILSFIDVVLLFFLFVFAVTKFWKRSTNLNEPLIRNNNNISIFLTTWFKLTLTVAILLTLVYTVASVLAFSSSSEVPWNQVDEVFWLVQTITHAVLVVLIIHEKRFEAVKHPLLVRLYWIANFFVISLFAVSAVIRLVSVDVDGTINFKVNDVVSFISLPLSLFLLFVAVKGSTGIVIPTEETRPLLEEETKLYDGGDETESEVTGFASASILSKAFWSWINPLLRKGYKSALKIDEIPTLSPEHRAERMSSIFESKWPKSNERSKHPVRITLLRCFWKELAFNAFLAIIRLCVMFVGPVLIQSFVDFTSGKRSSEYEGYYLVLILLVSKFIEVLATHHLNFQAQKLGTLLRSTLIPSLYKKGLMLSFSARQDHGIGTIVNYMAVDTQQLSDMMLQFNAVWIMPFQVAIGMFLLYNCLGASSVTAFLGLLGVFVFAVIGTRRNNHFQYNVMRNRDSRMKAVNEMLNYMRVIKFQAWEEHFSQRIMGFRETEYGWLSKLMFTICGNIVVMWSTPLLVSTITFGTAILLGVQLDAATVFTTTTVFKILQEPIRTFPQSMISLSQAFISLERLDRFMLSRELLGDSVEREEGCGGKTAVEIIDGTFSWDDDNMQQDLKNVNLEIKKGELTAIVGTVGSGKSSLLASILGEMRKISGKVRVCGNVAYVAQTSWIQNGTIEENILFGLPMDRRRYNEVIRVCCLEKDLEMMDYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSEIFKECVRGALKGKTIILVTHQVDFLHNVDQILVTRDGMIVQSGKYDELLDSGMDFKALVVAHETSMALVEQGQGVVMPGENLNKPMKSPEARNSGESNSLDRPVSSKKSSKLIKEEERETGKVSLHIYKLYCTEAFGWWGITVVLIFSLLWQASMMASDYWLAYETSEERAKMFNPSLFISIYAIITAVSIILVVIRSYIFTLLGLKTAQIFFTQILRSILRAPMSFFDTTPSGRILSRASTDQTNVDVLLPLFTGIVIAMYITVLSILIITCQNSWPTSFLIIPLIWLNIWYRGYYLATSRELTRLDSITKAPVIHHFSESIAGVMTIRSFRKQKNFCEENLKRVNDNLRMDFHNYSSNVWLGVRLELLGSFVFCISAMFMIILPSSIIKPENVGLSLSYGLSLNASLFWAVFMSCFIENKMVSVERIKQFTNIPSEPAWNIKDRMPPSNWPSQGNVDIKDLQVRYRLNTPLVLKGITLSISGGEKVGVVGRTGSGKSTLIQVFFRLVEPSRGKIIIDGIDISALGLHDLRSRFGIIPQEPVLFEGTIRSNIDPIGQYTDEEIWKSLERCQLKEVVATKPEKLDSLVVDNGENWSVGQRQLLCLGRVMLKRSRLLFMDEATASVDSQTDGVVQKIIREDFAACTIISIAHRIPTVMDCDRVLVVDAGRAKEFDKPSNLLQRQSLFGALVQEYANRSTEL 1504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g02003 1504 CDD ABC_6TM_ABCC_D1 329 616 IPR044746 GO:0140359
Gma19g02003 1504 MobiDBLite consensus disorder prediction 881 917 - -
Gma19g02003 1504 SMART AAA_5 1288 1472 IPR003593 -
Gma19g02003 1504 SMART AAA_5 669 847 IPR003593 -
Gma19g02003 1504 CDD ABC_6TM_ABCC_D2 945 1237 IPR044726 GO:0140359
Gma19g02003 1504 SUPERFAMILY ABC transporter transmembrane region 942 1242 IPR036640 GO:0005524|GO:0016021
Gma19g02003 1504 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1262 1496 IPR003439 GO:0005524
Gma19g02003 1504 Pfam ABC transporter 660 793 IPR003439 GO:0005524
Gma19g02003 1504 Pfam ABC transporter 1279 1427 IPR003439 GO:0005524
Gma19g02003 1504 Gene3D - 626 880 IPR027417 -
Gma19g02003 1504 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 641 862 IPR027417 -
Gma19g02003 1504 Gene3D - 1245 1495 IPR027417 -
Gma19g02003 1504 Gene3D ABC transporter type 1, transmembrane domain 303 624 IPR036640 GO:0005524|GO:0016021
Gma19g02003 1504 Gene3D ABC transporter type 1, transmembrane domain 907 1243 IPR036640 GO:0005524|GO:0016021
Gma19g02003 1504 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 642 865 IPR003439 GO:0005524
Gma19g02003 1504 MobiDBLite consensus disorder prediction 891 910 - -
Gma19g02003 1504 Coils Coil 1133 1153 - -
Gma19g02003 1504 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1255 1495 IPR027417 -
Gma19g02003 1504 CDD ABCC_MRP_domain1 642 841 - -
Gma19g02003 1504 SUPERFAMILY ABC transporter transmembrane region 318 620 IPR036640 GO:0005524|GO:0016021
Gma19g02003 1504 ProSitePatterns ABC transporters family signature. 767 781 IPR017871 GO:0005524
Gma19g02003 1504 PANTHER ABC TRANSPORTER C FAMILY MEMBER 4 88 1503 - -
Gma19g02003 1504 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 331 608 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gma19g02003 1504 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 88 1503 - -
Gma19g02003 1504 CDD ABCC_MRP_domain2 1260 1480 - -
Gma19g02003 1504 Pfam ABC transporter transmembrane region 947 1198 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gma19g02003 1504 Pfam ABC transporter transmembrane region 329 595 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gma19g02003 1504 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 947 1225 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g02003 Gma-Chr19 49023483 49029879 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g02003 642 1495 Calmodulin-binding Proteins AT2G36910 24.653 2.35e-60 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g02003 - K05666 gmx:100808752 2903.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g02003 19 49023483 49029879 Gma19g02003 19 49023483 49029879 ECH