Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01985 ATGGCAACAAATAGAttcgtgtgtgagatctgcaacaaagggttccagagggaccaaaaccttcagttgcaccgcagaggtcacaatcttccatggaaactgagacaaagaACAAGCACTGAGGTGAAGAAGCGGGTCTATGTGTGCCCTGAGCCATCATGCGTCCACCATAACCCAGCTCGTGCATTAGGGGACCTCACTGGCATAAAAAAACATTATAGCCGCAAACACGGTGAGAAGAAATGGAAATGTGACAAGTGCTCCAAAAGATACGCAGTGCAATCTGATTGGAAGGCTCACCAGAAAACTTGTGGCACTAGGGAATACAAATGTGATTGTGGTACCATATTTTCCAGGAGAGATAGTTTCATCACCCACAGAGCTTTCTGTGACGCATTAACTGAAGAAAACAACCGAGTGAACAACCAGGGATTAACAAGTGGCATGCCACCAAACTTACAAAGTCAAATACCCGATCTCATGTCTACCATGCCCCTAACCACTAGTCCCAACACAGCATCCAAATTCGGGGAATATGACCCTAAGAACCCTCTAAAATCACTAGCCCAAGAACTTGTCCCAATACCATTCAAGTTCATGAGCATGGGTGGGGGTATGTTCTCCACCAATGCAGGTGCACTCTTTGGTGGCCCAAAAACCATGTCTCCCTCTTCTTCCAGCCTCCAGCTAGGCTCCAGCACCTCATCAAGCTTCAATTACTTGCAAGACAGCGAAAACGGAGGACTAATCGCGGCCTCGGCTCAAATGTCCGCAACAGCATTACTACAGAAAGCAGCACAAATGGGTGCCACTGCAAGCAATAGCATTAACTCCCCAATGATGCAAAAAGGCTTTGTTAGTGGTACTACTACTGGTCCTGATCATGTTTCTTCCACTACTAGGCCACCATATTCTGGTGCTATGCTTCAGCACAACAACTCCTATGACCACTTCTCTCCACAGCCTGATCTTTCCAGCATGGCTGAGGTGAGTGGTGGAGGAGCATTCATCAATCAGTTGTTTCATAAAGGACAAGAGATTTCGCAAGTTTTCGATACTAACAATCCCGGTTCTGCCATGAATGATGTGGGAATGTTCGGCCAAATGCCAATGGGGAGAGATCATCACAACCAAGGGTTGATGAAGAGCGTGGAACAAGAAGTTAGTAATAGTTCCAGTTTGATGCATGGAAGAGATGTGAATGATGGTAACCACCCAATGCAGCCATCAACAAGGTTTGGAGGGAGTGACATGACAACTGTTCATGACTTTTTGGGCATTGGTGGTTCAACTTCAAGAGTTATGAATCATTTTCATCACCATTTTCCACACGAGGATTCAACTATAGAGGAACCCATGTGGGATGTTTGA 1371 0.426 MATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSTEVKKRVYVCPEPSCVHHNPARALGDLTGIKKHYSRKHGEKKWKCDKCSKRYAVQSDWKAHQKTCGTREYKCDCGTIFSRRDSFITHRAFCDALTEENNRVNNQGLTSGMPPNLQSQIPDLMSTMPLTTSPNTASKFGEYDPKNPLKSLAQELVPIPFKFMSMGGGMFSTNAGALFGGPKTMSPSSSSLQLGSSTSSSFNYLQDSENGGLIAASAQMSATALLQKAAQMGATASNSINSPMMQKGFVSGTTTGPDHVSSTTRPPYSGAMLQHNNSYDHFSPQPDLSSMAEVSGGGAFINQLFHKGQEISQVFDTNNPGSAMNDVGMFGQMPMGRDHHNQGLMKSVEQEVSNSSSLMHGRDVNDGNHPMQPSTRFGGSDMTTVHDFLGIGGSTSRVMNHFHHHFPHEDSTIEEPMWDV 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01985 456 Gene3D Classic Zinc Finger 6 48 - -
Gma19g01985 456 MobiDBLite consensus disorder prediction 287 309 - -
Gma19g01985 456 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 440 - -
Gma19g01985 456 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Gma19g01985 456 Gene3D Classic Zinc Finger 60 140 - -
Gma19g01985 456 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 28 IPR013087 -
Gma19g01985 456 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 1 440 - -
Gma19g01985 456 Pfam Zinc finger, C2H2 type 6 28 IPR013087 -
Gma19g01985 456 SMART c2h2final6 47 77 IPR013087 -
Gma19g01985 456 SMART c2h2final6 6 28 IPR013087 -
Gma19g01985 456 SMART c2h2final6 82 102 IPR013087 -
Gma19g01985 456 SUPERFAMILY beta-beta-alpha zinc fingers 5 103 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01985 Gma-Chr19 48919396 48921174 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g01985 1 296 IDZ Gene Family AT3G50700 53.605 7.01e-100 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma19g01985 zf-C2H2 0.0045 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01985 - - gmx:100782774 939.873
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01985 19 48919396 48921174 Gma19g01985 19 48919396 48921174 ECH
Gma19g01985 19 48919396 48921174 Gma03g01947 03 45288790 45291659 GST