Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01970 ATGAGTGGTGCTGAAGCGCGACCTTGTGACTACTGTGGCAACTCCACAGCACTTCTCTATTGCAGAGCCGATTCAGCAAAACTCTGTTTCTCGTGCGATCGCGAAGTTCACTCCACCAACCAGCTCTTCTCCAAGCACACGCGCACGCTGCTCTGCGACGCATGCGATGATTCCCCTGCCACCATACTCTGTTCAACCGACACCTCTGTTCTGTGCCAGAACTGCGACTGGGAGAACCACAACCCTGCGCTCTCCGATTCCCTTCACGAGCGAAGGCCCCTCGAAGGCTTCACTGGGTGCCCTTCCGTCTCCGAACTCTTGTCCATCGTGGGGTTTTCGGATATCAGCAAAAAATCTCTGCTTTTTTCGCCTCAGGGAAGTGTCGCTGATGGGTTCTTCGGCGCCAGCGAGATTGAAGGGCTTTCGGATATGTTCGTGTGGGATGCGCCTTCTTTTGTTACGCTTGATGATTTGATTTCTTCCTCTCCTTCTTCTCATAGCTTTCAGGCCATGAAGGTTCCTCCTCTGCCCAAGAATCGAAAGGCTGCTTGTGGGCAACACAAAGAAGAGATTCTTAGTCAGCTTCGGGAATTGGCCAAGTCTGAGCCTTTGGACCTTGAACCATATGTGCAATCGGGTAACTTGTCCTTGGGTTTTGAACGTGACCCGGAGGCTGATATCTTTCCTTCTCATGAGTGGCATAGAGAAAGCAGCGAGCCTATGCATCAAGTTGTGCCTCCTGACCCATCAATGGGAACTTATACTGAAGAAATTCCAGTTAAACATTCTACTTCTGCTGTTGGGGAAAATCACACCTATGGTGACAATGAAGGGAAACCATCCATTTCTCTCAAGTCTGAAACCCTATCAACTACTCCCAAAGCTGCAGCATGTGAGTTAACAAGCCAAGAAAGAGATTCTGCATTATTACGGTACAAGCAGAAGAAGAAAACAAGGAGATTTGACAAGCACATAAGGTATGAATCACGAAAAGTTCGGGCTGAAAGCAGGGTAAGAGTCAAGGGCCGATTTGCCAAGATGGGACATGAACATTGA 1056 0.4905 MSGAEARPCDYCGNSTALLYCRADSAKLCFSCDREVHSTNQLFSKHTRTLLCDACDDSPATILCSTDTSVLCQNCDWENHNPALSDSLHERRPLEGFTGCPSVSELLSIVGFSDISKKSLLFSPQGSVADGFFGASEIEGLSDMFVWDAPSFVTLDDLISSSPSSHSFQAMKVPPLPKNRKAACGQHKEEILSQLRELAKSEPLDLEPYVQSGNLSLGFERDPEADIFPSHEWHRESSEPMHQVVPPDPSMGTYTEEIPVKHSTSAVGENHTYGDNEGKPSISLKSETLSTTPKAAACELTSQERDSALLRYKQKKKTRRFDKHIRYESRKVRAESRVRVKGRFAKMGHEH 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01970 351 CDD Bbox1_BBX-like 8 51 - -
Gma19g01970 351 Pfam CCT motif 305 346 IPR010402 GO:0005515
Gma19g01970 351 ProSiteProfiles CCT domain profile. 305 347 IPR010402 GO:0005515
Gma19g01970 351 SMART bboxneu5 4 51 IPR000315 GO:0008270
Gma19g01970 351 SMART bboxneu5 52 94 IPR000315 GO:0008270
Gma19g01970 351 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 13 5 349 - -
Gma19g01970 351 CDD Bbox1_BBX-like 51 94 - -
Gma19g01970 351 ProSiteProfiles Zinc finger B-box type profile. 4 51 IPR000315 GO:0008270
Gma19g01970 351 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 5 349 - -
Gma19g01970 351 ProSiteProfiles Zinc finger B-box type profile. 47 94 IPR000315 GO:0008270
Gma19g01970 351 Pfam B-box zinc finger 51 94 IPR000315 GO:0008270
Gma19g01970 351 Pfam B-box zinc finger 5 49 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01970 Gma-Chr19 48783459 48788096 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g01970 7 320 C2C2-CO-like Transcription Factor Family AT2G47890 40.798 7.34e-73 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Gma19g01970 zf-B_box 3.9e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01970 - - gmx:100777428 712.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01970 19 48783459 48788096 Gma19g01970 19 48783459 48788096 ECH
Gma19g01970 19 48783459 48788096 Gma03g01928 03 45154402 45158088 GST
Gma19g01970 19 48783459 48788096 Gma10g00207 10 1889480 1891888 PCT
Gma19g01970 19 48783459 48788096 Gma02g01392 02 16088863 16091850 PCT
Gma10g00207 10 1889480 1891888 Gma19g01970 19 48783459 48788096 PCT
Gma02g01392 02 16088863 16091850 Gma19g01970 19 48783459 48788096 PCT