Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01960 ATGAGAAAGAGGAGAGACATGGACTCTCCAAACACACAACAAGGCCTCCTTCCCTCCAAGAAAGGTGTGAAAGATAGTTTGTACACTGAACTGTGGCGTGCATGTGCTGGGTCATTCGTTTATGTTCCTCGCGAAGAAGAGACGGTTCTCTACTTCCCTCAAGGTCACTTGGAGCAGGTTGCTGCATATACTCAGCATCAGCAAGATGGTCACATGGAAATTCCTGTGTATGATTTGCCTTCTAAGATCTTATGCAAGATTATGCATATTGAATTAAAGGCCGAAGCCTTCTCAGACGAGGTTTATGCTCAAGTTACATTAGTTCCGGCGCTCAAGCAAGATAACCTTCGTTTGGAGGTGGAAGAGAATGATCAGATACCTTCCATAACTACAACCTATACTTTTAGTAAGATACTCACTCCATCAGACACAAGTACACATGGTGGATTCTCTGTTCCGAAGAAACATGCTGATGAATGCTTCCCTCCGCTGGACATGACTCAACAAACACCAGCGCAGGAAATTGTTGCAAAGGACTTGAATGGGTTTGAGTGGCATTTTCGACACATATATCGTGGTAAGCCGAAACGACACTTGCTTACTAGCGGTTGGAGCACATTCGTGAATGCAAAGAAACTTGTTGCTGGAGATTCATGCATTTTCGTTAGAGCGGAATCTGGAGAAATTCGTGTTGGGATTCGTCGGGCAACGGAACATCTCAGCAATGTATCGCAATCTTCATCTCTGATATCGGGTCATAGCATGCAACTTGGAATTTTGGCTAGTGCTTCCCACGCTGTTAGCTCAGGAACCATGTTTATTGTCTATTACCACCCATGGACAAATCCCTTTGAATTTATTGTTCCTTTGCGAACCTATCTGAAGTCAACTGTACCAGACTATCCAATTGGAATGAGGGTACAAATGCAGCATGAAGTTGAAGAATCTTTAAGAAGACATGCAGGTACGATAATTGGTCATGAAGATATCGACAAGATTAGGTGGCCTGGTTCTGAATGGAGATGTCTCAAGGTGCAATGGGATGCCGTACTAGATGACAAAATGAATCCTGAAAGGGTTTGTCCTTGGTGGATTGAGCCCTTGGAATCTGCCAAAGAGAAGAAGCAAGTTCCTGCCCTCCCCACAACAAAAAAAGCACTTGCACTTAACCAGCGCTCTTTGCCTGGAATAAGTAGCTTTGGCATGCATGATGGTCAGAATTCAGCTGGGCCTTCATCTCAGACTCGGAGAGAAGATAGAGACTTGCAAGGTCAAGATTACAGCGGCATACATTCTGCACAGCCTTTACAAAGAGCACCACCAACTGATGTTATCCACCCCTCGAAGGTCCCAATCCGTGGCTCGCGGTTTGGGAAGGAGAATCCGAATCAGCTTCCCTTTCCCATGCAAGGTCCTCTTCATAAATCTCTTAGCAGATCAATGTCACTTACACATGAAGACCTGTCAATTACAAGCTCAAATCTAAGCTCCATTGGTTCTGAATCTCTGGGATGGCCTTCAACTGAATCTAGAAATGAAAATGATGTTCCTTTTGGGCAGCCTGGCAGTTGCAGTACATTCAAGCTTTTTGGAGTTAGCTTAATTGACCGCTCCTCGGAGCTCCCTTCATTGCAATCTGCTGCTTTCAACAAGACTTCGAGTCTCCTTTCTAATCCTCCAATGCGTGTTGCCCCAGGGAAAACATGCAAGAAGTGTCACCGTCTTAATAATCGGAGCTGCACAAAGGTGCTTAAGTTGGGAACTGCTCTTGGAAGAGCAGTCGACCTTGCACGCTTTCATGGATATACCGAACTCATTGCTGAACTCGACTCCATGTTTGAGTTTCGAGGAAGTTTAATCAATGAAAGCAGTGGATGGCATGTCACATGCATGGATGATGATGGAGACATGATGCAATTAGGAGATTATCCATGGCA 1937 0.4486 MRKRRDMDSPNTQQGLLPSKKGVKDSLYTELWRACAGSFVYVPREEETVLYFPQGHLEQVAAYTQHQQDGHMEIPVYDLPSKILCKIMHIELKAEAFSDEVYAQVTLVPALKQDNLRLEVEENDQIPSITTTYTFSKILTPSDTSTHGGFSVPKKHADECFPPLDMTQQTPAQEIVAKDLNGFEWHFRHIYRGKPKRHLLTSGWSTFVNAKKLVAGDSCIFVRAESGEIRVGIRRATEHLSNVSQSSSLISGHSMQLGILASASHAVSSGTMFIVYYHPWTNPFEFIVPLRTYLKSTVPDYPIGMRVQMQHEVEESLRRHAGTIIGHEDIDKIRWPGSEWRCLKVQWDAVLDDKMNPERVCPWWIEPLESAKEKKQVPALPTTKKALALNQRSLPGISSFGMHDGQNSAGPSSQTRREDRDLQGQDYSGIHSAQPLQRAPPTDVIHPSKVPIRGSRFGKENPNQLPFPMQGPLHKSLSRSMSLTHEDLSITSSNLSSIGSESLGWPSTESRNENDVPFGQPGSCSTFKLFGVSLIDRSSELPSLQSAAFNKTSSLLSNPPMRVAPGKTCKKCHRLNNRSCTKVLKLGTALGRAVDLARFHGYTELIAELDSMFEFRGSLINESSGWHVTCMDDDGDMMQLGDYPW 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01960 645 CDD B3_DNA 135 235 IPR003340 GO:0003677
Gma19g01960 645 ProSiteProfiles PB1 domain profile. 578 645 IPR000270 GO:0005515
Gma19g01960 645 SUPERFAMILY DNA-binding pseudobarrel domain 126 265 IPR015300 -
Gma19g01960 645 Pfam Auxin response factor 263 344 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gma19g01960 645 Gene3D - 574 645 - -
Gma19g01960 645 Gene3D - 301 374 - -
Gma19g01960 645 MobiDBLite consensus disorder prediction 395 413 - -
Gma19g01960 645 MobiDBLite consensus disorder prediction 395 467 - -
Gma19g01960 645 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 16 645 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gma19g01960 645 Gene3D - 133 237 IPR015300 -
Gma19g01960 645 ProSiteProfiles B3 DNA-binding domain profile. 135 237 IPR003340 GO:0003677
Gma19g01960 645 Pfam B3 DNA binding domain 135 236 IPR003340 GO:0003677
Gma19g01960 645 SMART B3_2 135 237 IPR003340 GO:0003677
Gma19g01960 645 PANTHER AUXIN RESPONSE FACTOR 16 645 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01960 Gma-Chr19 48690115 48700778 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g01960 576 645 B3 DNA Binding Superfamily AT5G62000 52.857 5.73e-18 86.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gma19g01960 B3 4.7e-24 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01960 - - gmx:100802387 1295.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01960 19 48690115 48700778 Gma19g01960 19 48690115 48700778 ECH
Gma19g01960 19 48690115 48700778 Gma03g01921 03 45069751 45080265 GST