Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01956 ATGGCGGAAGAGAGTAAATCTAGCAGCGAGGAAAGTGTGAAGCTGTTCGTAGGGCAAGTGCCCAAGCACATGACCGAACCCGAACTCCTTGCAATGTTCAAGGAGTTCGCGCTCGTCGACGAGGTCAACATAATCAAAGACAAAGCAACTCGTGCTTCCCGAGGTTGTTGCTTCCTGATTTGTCCGTCAAGGGAGGAGGCGGATAAGGCCGTCAATGCGTGTCACAATAAGAAGACGTTACCCGGGGCATCTAGTCCATTACAAGTGAAGTATGCAGATGGCGAGCTGGAAAGATTAGAACACAAACTCTTCATTGGCATGCTTCCAAAGAATGTTTCTGAAGTTGAAATATCTGCTCTTTTCTCCAAGTATGGAACTATAAAGGATTTACAAATTTTAAGAGGTTCTCAGCAAACGAGTAAAGGTTGTGCATTTTTGAAGTATGAAACCAAAGAACAGGCTCTTGCTGCTTTAGAGGCAATCAATGGAAAGCATAAAATGGAGGATTCGAGTGTTCCCTTAGTTGTCAAATGGGCTGATACTGAAAAGGAAAGGCAAGCTCGTAGAGCTCAGAAAGCACAGTCCCAAGCTTCTAATGTACCACATACTGATTCTCAGCACCTGTCAATGTTTGGAGCCTTGCCTATGAGTTATGTTCCTCCGTATAATGGATATGCTTATCAGGCTCCTGGAGGTTATGGCCTCATGCCATACCGCATGCCACCAATGCAGAGTCAACATGGTTACCATAATGTGATGCCTCACATGAATCAAGTAAATGCATTACGGCCTGATCTTGGCCCCAACATGAACCCTAGAAATTATCATGTGCCTCCTGCAAGTTATGTTAGCTCTTATCCTGCTGTGCCAGGTCTACAACATCCTATGGCATATCCTACAGGAATGATTAGTCCAAGGCCCATGAATACTTCTCCTGGTTCAGTTTCACCTGCTGGTGGAAATAACAGCTCTGCTGCATCTTCAGGTGCCAGCAAAAATTCTGGGGGTCAGGTTGAAGGACCACCTGGTGCGAACCTATTTATTTATCACATACCTCAAGAATTTGGAGATCAAGAGCTTGCTACTGCTTTTCAACCATTTGGTAGAGTTTTGAGTGCTAAAGTTTTTGTTGATAAAGCAACTGGTGTTAGCAAATGTTTTGGGTTTGTAAGTTATGATACCCCAGAGGCTGCTCAATCTGCCATCAGTATGATGAATGGATGCCAATTAGGAGGAAAGAAATTAAAGGTCCAGCTTAAGAGGGATAACAAACAGGGTAAACCTTACTGA 1290 0.4411 MAEESKSSSEESVKLFVGQVPKHMTEPELLAMFKEFALVDEVNIIKDKATRASRGCCFLICPSREEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEVEISALFSKYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEDSSVPLVVKWADTEKERQARRAQKAQSQASNVPHTDSQHLSMFGALPMSYVPPYNGYAYQAPGGYGLMPYRMPPMQSQHGYHNVMPHMNQVNALRPDLGPNMNPRNYHVPPASYVSSYPAVPGLQHPMAYPTGMISPRPMNTSPGSVSPAGGNNSSAASSGASKNSGGQVEGPPGANLFIYHIPQEFGDQELATAFQPFGRVLSAKVFVDKATGVSKCFGFVSYDTPEAAQSAISMMNGCQLGGKKLKVQLKRDNKQGKPY 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01956 429 PRINTS Paraneoplastic encephalomyelitis antigen family signature 13 28 IPR002343 GO:0003723|GO:1990904
Gma19g01956 429 PRINTS Paraneoplastic encephalomyelitis antigen family signature 106 121 IPR002343 GO:0003723|GO:1990904
Gma19g01956 429 PRINTS Paraneoplastic encephalomyelitis antigen family signature 121 133 IPR002343 GO:0003723|GO:1990904
Gma19g01956 429 PRINTS Paraneoplastic encephalomyelitis antigen family signature 162 179 IPR002343 GO:0003723|GO:1990904
Gma19g01956 429 CDD RRM3_CELF1-6 346 418 - -
Gma19g01956 429 Gene3D - 314 421 IPR012677 -
Gma19g01956 429 SMART rrm1_1 345 418 IPR000504 GO:0003723
Gma19g01956 429 SMART rrm1_1 102 177 IPR000504 GO:0003723
Gma19g01956 429 SMART rrm1_1 14 90 IPR000504 GO:0003723
Gma19g01956 429 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 101 181 IPR000504 GO:0003723
Gma19g01956 429 CDD RRM1_2_CELF1-6_like 102 177 - -
Gma19g01956 429 Gene3D - 2 97 IPR012677 -
Gma19g01956 429 SUPERFAMILY RNA-binding domain, RBD 7 95 IPR035979 GO:0003676
Gma19g01956 429 MobiDBLite consensus disorder prediction 183 204 - -
Gma19g01956 429 Gene3D - 98 190 IPR012677 -
Gma19g01956 429 MobiDBLite consensus disorder prediction 300 339 - -
Gma19g01956 429 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 344 422 IPR000504 GO:0003723
Gma19g01956 429 PANTHER RNA BINDING PROTEIN 6 416 - -
Gma19g01956 429 SUPERFAMILY RNA-binding domain, RBD 101 424 IPR035979 GO:0003676
Gma19g01956 429 PANTHER RNA-BINDING PROTEIN-DEFENSE RELATED 1-RELATED 6 416 - -
Gma19g01956 429 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 13 94 IPR000504 GO:0003723
Gma19g01956 429 MobiDBLite consensus disorder prediction 304 335 - -
Gma19g01956 429 CDD RRM1_2_CELF1-6_like 14 90 - -
Gma19g01956 429 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 346 416 IPR000504 GO:0003723
Gma19g01956 429 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 15 79 IPR000504 GO:0003723
Gma19g01956 429 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 103 164 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01956 Gma-Chr19 48666428 48671007 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g01956 341 425 Eukaryotic Initiation Factors Gene Family AT1G71770 38.636 1.92e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01956 K13207 - gmx:100776362 806.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01956 19 48666428 48671007 Gma19g01956 19 48666428 48671007 ECH
Gma19g01956 19 48666428 48671007 Gma03g01918 03 45042555 45047637 GST
Gma19g01956 19 48666428 48671007 Gma10g00213 10 1964091 1968033 PCT
Gma19g01956 19 48666428 48671007 Gma02g01385 02 16001613 16005522 PCT
Gma10g00213 10 1964091 1968033 Gma19g01956 19 48666428 48671007 PCT
Gma02g01385 02 16001613 16005522 Gma19g01956 19 48666428 48671007 PCT