Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01950 atgcggattgACAGGTGCACCCTCTCTCCTCTTCTTCTTGTGTACGTCGCTACAGTTTACCGTTCGCTGCTTCCATTGACGGATTTGAAGAAGTCTCCACCATCGTCGTGTTGTTTCCGTGTCAAGCGCGAGCAAGCATCCCAAAACCCTAGCTCGCGTTCTGCTTTCGTCTTTTACATCAGGATGGAGTCTCAGGTGAAGCACGCACTTGTTGTCAAAGTTATGGGTCGTACTGGATCCAGAGGACAAGTAACCCAGGTTAGAGTGAAATTTTTGGATGATCAGAACCGTCACATCATGAGGAATGTGAAAGGACCTGTGCGAGAAGGAGACATTCTCACCCTACTCGAGTCTGAAAGGGAAGCAAGAAGATTGCGCTAG 381 0.4751 MRIDRCTLSPLLLVYVATVYRSLLPLTDLKKSPPSSCCFRVKREQASQNPSSRSAFVFYIRMESQVKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRHIMRNVKGPVREGDILTLLESEREARRLR 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01950 126 Pfam Ribosomal protein S28e 65 125 IPR000289 GO:0003735|GO:0005840|GO:0006412
Gma19g01950 126 Gene3D - 60 126 IPR012340 -
Gma19g01950 126 SUPERFAMILY Nucleic acid-binding proteins 62 126 IPR012340 -
Gma19g01950 126 CDD S1_S28E 67 126 IPR000289 GO:0003735|GO:0005840|GO:0006412
Gma19g01950 126 PANTHER 40S RIBOSOMAL PROTEIN S28 62 126 IPR000289 GO:0003735|GO:0005840|GO:0006412
Gma19g01950 126 ProSitePatterns Ribosomal protein S28e signature. 117 125 IPR028626 -
Gma19g01950 126 PANTHER 40S RIBOSOMAL PROTEIN S28 62 126 - -
Gma19g01950 126 Hamap 30S ribosomal protein S28e [rps28e]. 62 126 IPR000289 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01950 Gma-Chr19 48638052 48640436 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g01950 62 126 Cytoplasmic Ribosomal Protein Gene Family AT5G03850 87.692 3.54e-35 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01950 K02979 - egr:104443388 104.375
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01950 19 48638052 48640436 Gma19g01950 19 48638052 48640436 ECH