Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01949 ATGCCGGCTGGTCATGGTTTGAGATCCCGCACCAGAGATTCCTTCTCTCGTCCTTTCAGGAAGAAGGGAACCATCGCCCTCACCACATACCTGAGAACCTACCACGTCGGCGACTATGTTGACGTCAAGGTTAACGGTGCCGTTCACAAGGGAATGCCCCACAAATTCTACCATGGCCGCACCGGACGCGTCTGGAATGTCACCAAACGTGCTGTTGGCGTCGAAGTCAACAAGCAGGTTGGCAACAGAATTATAAGGAAGAGGATTCATGTGCGGGTAGAGCATGTTATGCCTTCAAGGTGCACTGAGGAGTTCCGCCTCAGGAAGATTAAGAATGATCAGCTAAAGGCCGAAGCCAAGGTCAAGGGTGAGAAGATCAGCACCAAGAGACAGCCTCAGGGTCCCAAACCCGGTTTCATGGTGGAGGGTGCGACCCTTGAGACAGTTACCCCCATCCCATATGATGTTGTCAATGACCTCAAGGGAGGTAGAGTTTTGTGTATTATTATGGTTGCTGACTTTGTGGACGCAAATCGAGGGTGGGTTGAATCTACCCCTTATTTTTCCTGGGTCGTAGGTTCAGAGCCTCGAAGAAGCGTTGTTATACTTGCCTATGCCCTTCACCGCAACGATGTGCGTGATGGTGGCCTTGTTGGGGAGGATGCCAAGGGCGAACATGTGAAGGGCTACGGGTTTGAGAGAAGGGTCGACAACAGAGTTGGAGTAGAGGTAGATGAGGGTGTTGAAGTGGTGTTGCTTGAGGCAGTTATTATTCGAAACGACGATGTCGTAACGACAAGTGGAGGATCAGGTGCATGTTGGAAAATGAAAACACCTTACACACTCTGTCATCTCCTACTGCTTATTTTCTCTGCTGGAATAGCCTCTGATTTTGTAGTGCGAGGGCGTGCTCATGGGGTGAAGATCCCAGAACATTGGTGCCACAAGCTGATCCATTTAAGCAATTGTGAGTTGCAGAAATGCTTTCAAGAGTGCTCTAAGCAACCATATGGAATTGGAGAATGCAAGGACTCCACTTGCTTCTGCACATACTATTGTAAAGATCCCCCACTATAA 1077 0.494 MPAGHGLRSRTRDSFSRPFRKKGTIALTTYLRTYHVGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAVGVEVNKQVGNRIIRKRIHVRVEHVMPSRCTEEFRLRKIKNDQLKAEAKVKGEKISTKRQPQGPKPGFMVEGATLETVTPIPYDVVNDLKGGRVLCIIMVADFVDANRGWVESTPYFSWVVGSEPRRSVVILAYALHRNDVRDGGLVGEDAKGEHVKGYGFERRVDNRVGVEVDEGVEVVLLEAVIIRNDDVVTTSGGSGACWKMKTPYTLCHLLLLIFSAGIASDFVVRGRAHGVKIPEHWCHKLIHLSNCELQKCFQECSKQPYGIGECKDSTCFCTYYCKDPPL 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01949 358 ProSitePatterns Ribosomal protein L21e signature. 37 62 IPR018259 GO:0003735|GO:0005840|GO:0006412
Gma19g01949 358 PANTHER 60S RIBOSOMAL PROTEIN L21-1 1 163 - -
Gma19g01949 358 SUPERFAMILY Translation proteins SH3-like domain 3 99 IPR008991 -
Gma19g01949 358 PANTHER 60S RIBOSOMAL PROTEIN L21 1 163 IPR001147 GO:0003735|GO:0005840|GO:0006412
Gma19g01949 358 Pfam Ribosomal protein L21e 1 101 IPR001147 GO:0003735|GO:0005840|GO:0006412
Gma19g01949 358 Gene3D - 99 156 - -
Gma19g01949 358 Gene3D Ribosomal protein L21 1 97 IPR036948 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01949 Gma-Chr19 48627744 48632792 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g01949 1 163 Cytoplasmic Ribosomal Protein Gene Family AT1G09690 85.276 4.32e-101 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01949 K02889 - gmx:100500046 336.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01949 19 48627744 48632792 Gma19g01949 19 48627744 48632792 ECH
Gma19g01949 19 48627744 48632792 Gma03g01910 03 44995443 44996656 GST