Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01933 ATGCGTCTTGTGATTTATTATTATAAGGATGGGAAGAGGTGGATGACAGTGACGGAGGTAGTACTGTGTGTGGATCCATGCACGGTGGAGGTTCGATTCACAATGCAATTTGTCCCCGGAACAATCCAACGGCGCCTGCTTTCTTTGTTCGTGTTTTGCATCAGGATGGAGTCTCAGGTGAAGCACGCACTTGTTGTCAAAGTTATGGGTCGTACTGGATCCAGAGGACAAGTGACCCAGGTTAGAGTGAAGTTTTTGGATGATCAGAACCGTCACATCATGAGGAATGTGAAAGGACCTGTGAGAGAAGGAGACATTCTCACCCTACTCGAGTCTGAAAGGGAAGCAAGAAGATTGCGCTAG 363 0.4738 MRLVIYYYKDGKRWMTVTEVVLCVDPCTVEVRFTMQFVPGTIQRRLLSLFVFCIRMESQVKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRHIMRNVKGPVREGDILTLLESEREARRLR 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01933 120 PANTHER 40S RIBOSOMAL PROTEIN S28 56 120 IPR000289 GO:0003735|GO:0005840|GO:0006412
Gma19g01933 120 CDD S1_S28E 61 120 IPR000289 GO:0003735|GO:0005840|GO:0006412
Gma19g01933 120 Hamap 30S ribosomal protein S28e [rps28e]. 56 120 IPR000289 GO:0003735|GO:0005840|GO:0006412
Gma19g01933 120 ProSitePatterns Ribosomal protein S28e signature. 111 119 IPR028626 -
Gma19g01933 120 Pfam Ribosomal protein S28e 59 119 IPR000289 GO:0003735|GO:0005840|GO:0006412
Gma19g01933 120 Gene3D - 54 120 IPR012340 -
Gma19g01933 120 SUPERFAMILY Nucleic acid-binding proteins 56 120 IPR012340 -
Gma19g01933 120 PANTHER 40S RIBOSOMAL PROTEIN S28 56 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01933 Gma-Chr19 48513901 48519751 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g01933 56 120 Cytoplasmic Ribosomal Protein Gene Family AT5G03850 87.692 1.01e-34 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01933 K02979 - egr:104443388 104.375
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01933 19 48513901 48519751 Gma19g01933 19 48513901 48519751 ECH
Gma19g01933 19 48513901 48519751 Gma03g01894 03 44872022 44877672 GST