Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01919 ATGCATTCCCAGAATGTTGTAGAGATGGAAGGCAAGACAGAAATTCGTATGACATCAGCTGCTTCCTTTGTTGAAGGGGGGATTCAAGAATCCTGTGATGATGCTTGCAGCATATGCCTTGAGGAGTTTTGTGCAAGTGATCCTTCGACGGTCACTACCTGCAAGCATGAGTTTCACCTGCAGTGCATTCTCGAATGGTGTCAGAGAAGCTCCCAGTGTCCTATTTGCTGGCAACCTATTAGCTTGAAGGATCCTACTAGTCAAGAATTGTTTGAGGCAGTAGAGCAGGAGAGAAGCTGGAGGGCTACCCCTTCAAGAAATGCTGCTATTTTTCATCACCCAGCCTTTGGTGATTTTGAATTGCAGCATTTGCGCATGAATGCAAATGATGCTGACTTTGAAGAGAGAATTATTCAACATTTAGCTGCTGCTGCAACGATGAGGAGAGTGAACCAGCTTGGTCGGAGGGAAGGGCAGCAAACTCGTTCATCACCTCATGTTCATCCACACTTCTTAGTGTTCTCTAATCAGCCTATTGCGCCTTCATCAGGTCTTGATCCAGTTTCCAGAGGGGAAAATGACCCAACAGCAATTCCTAATAGAAGTCCATCTGCCCCAATAACATCTGATGGAAATGAAGCATCGCAGCAGATCCTGCACCTTCAAACTCAAAGCTCTTCTTCAGCTTCTGGATCTCCTGTCATGGCTACAAATCGCCAAGGAATTTACTCTAATGATAGAGGCTCTACTGCTCGTTCTTCTCCAGTGGTCCAAGATAGAGCAGAATCATCTGAATTGCAGTCATTTTCTGATTCTCTGCGGTCCAGACTTAATGCGGTGTCCATGAGATACAAAGAGTCAATCTCAAAGGGCACTAGGGGATGGAAGGAGAGGCTGTTCTCGCATAGTTCTTCCATGTCAGAACTTGGTTCAGAAACAAGGAGGAGAGAGATGAAAGCTGGAATTGCTAGTGTATCCCGATTGATGGAATCCCTTGAAACTAGTGAAAATAATAGAGCTGTGGGTACTTCTTTGTCAAATCAAAATCATATAGAGGATAGTTCCATGGGAGGGGTGAGCAACCAGAACAATGTTGAAGCTAGTGGAGAGAAATCTTCACATGATGACAATACTCCAGCTGCATGTTCTGCTAGTTCACATTTAAATTGA 1170 0.4462 MHSQNVVEMEGKTEIRMTSAASFVEGGIQESCDDACSICLEEFCASDPSTVTTCKHEFHLQCILEWCQRSSQCPICWQPISLKDPTSQELFEAVEQERSWRATPSRNAAIFHHPAFGDFELQHLRMNANDADFEERIIQHLAAAATMRRVNQLGRREGQQTRSSPHVHPHFLVFSNQPIAPSSGLDPVSRGENDPTAIPNRSPSAPITSDGNEASQQILHLQTQSSSSASGSPVMATNRQGIYSNDRGSTARSSPVVQDRAESSELQSFSDSLRSRLNAVSMRYKESISKGTRGWKERLFSHSSSMSELGSETRRREMKAGIASVSRLMESLETSENNRAVGTSLSNQNHIEDSSMGGVSNQNNVEASGEKSSHDDNTPAACSASSHLN 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01919 389 CDD RING-H2_PA-TM-RING 36 76 - -
Gma19g01919 389 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 8 386 - -
Gma19g01919 389 SMART ring_2 36 76 IPR001841 -
Gma19g01919 389 SUPERFAMILY RING/U-box 29 84 - -
Gma19g01919 389 MobiDBLite consensus disorder prediction 195 265 - -
Gma19g01919 389 MobiDBLite consensus disorder prediction 347 389 - -
Gma19g01919 389 ProSiteProfiles Zinc finger RING-type profile. 36 76 IPR001841 -
Gma19g01919 389 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 85 IPR013083 -
Gma19g01919 389 MobiDBLite consensus disorder prediction 176 265 - -
Gma19g01919 389 Pfam Ring finger domain 35 76 IPR001841 -
Gma19g01919 389 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHF2A 8 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01919 Gma-Chr19 48401763 48409064 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g01919 33 84 C3H Transcription Factor Family AT4G00335 46.154 3.97e-12 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01919 K19043 - gmx:100819110 755.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01919 19 48401763 48409064 Gma19g01919 19 48401763 48409064 ECH
Gma19g01919 19 48401763 48409064 Gma03g01879 03 44755188 44760420 GST
Gma19g01919 19 48401763 48409064 Gma10g00787 10 10613856 10617269 PCT
Gma19g01919 19 48401763 48409064 Gma02g01814 02 42067306 42071654 PCT
Gma10g00787 10 10613856 10617269 Gma19g01919 19 48401763 48409064 PCT
Gma02g01814 02 42067306 42071654 Gma19g01919 19 48401763 48409064 PCT