Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01917 ATGGGAAACAATTGTCTCGGATCGAAAACCTCAAATGATGCACTATTTCCCTATGTTCTTCCGAGTTCATTCTGGTGGATTCATCAAACAAGTGTCAAAGAAATTTCTGATGCACCTTCAATTGTGAGTAGAATTCAAGACACACATTTTCTAGAGAATGTTCAAGAAAAGCCACCACATGTAGTGAAAATTAACAATGAGGAGATGAAGCTGAAACCAGTTCCACTTCCAACCAATAAACACCAGAAAGAGACTAACATGTCTTCAGGGGAACCAATAAGGCAAATACAAAAAATGCCTCACAAAGTTAAGAGGCTACCAATAGGGCTTCAAGCCGAGTCAATTTTGAAGAGAAAAAATGGTAACTTTAAGGAGTACTATAACTTGGGACAAGAGCTTGGGAAGGGGCAATATGGAACAACATTCCTATGCACTGAGAAAGCCACTGGGAAAAAGTATGCATGCAAGTCCATTCCAAAAGTGAAATTGGCTATGGATGATGATGTGGAGGATGTGAGGAGGGAGATTGAGATAATGCATCACTTGGAAGGGTGTCCTAATGTGATATCAATCAAAGGGTCTTATGAGGATGGTATTGCAGTTTATGTTGTGATGGAGTTGTGTGGAGGGGGTGAACTGTTTGATAGGATAGTGGAAAAGGGGCATTACACAGAGAGAAAAGCAGCTAAACTTGCAAGGACTATAGTCAGTGTTATAGAGGGGTGCCACTCCCTTGGAGTGATCCATCGGGATCTTAAGCCTGAGAATTTTCTTTTCGTTGATGGGAATGAAGAGTCTACTCTTAAGGCCATAGATTTTGGATTGTCTGTTTTCTTCAAACCAGGAGACATTTTTAAGGACGTGGTTGGAAGTCCTTATTACATCGCACCTGAAGTTCTACGTAGGCATTATGGTCCAGAAGTTGATGTGTGGAGTGCAGGTGTGATCATATACATTCTCTTATGCGGAACACCTCCATTTTGGGGTGAATCGGAGCAAGAGATATTTGAAGAAGTTTTGCATGGTGATCTTGATTTCTCTTCAGATCCTTGGCTTAATATCTCTGAAAGTGCTAAAGACTTGGTTAGGAAAATGCTTGTTAGAGATCCTAGAAAACGGATGACAGCACATGAAGTTCTTCGTCACCCTTGGATTCAGGTTGATGGAGTTGCTCCAGACAAGCCTCTTGATTCTGCAGTTTTGAGTCGCCTGAAGCAGTATTCTGTAATGAGCAAGCTCAAAAAAATGGCTCTTAGAGTTATTGCAGAGAATCTCTCAGAAGAAGAAATTTTTGAACTGAAAGTAATGTTTAAGATGATAGACACAGACAACAGTGGTCATATTACTTTAGAAAAACTTAAGGCTGGATTGAAAATGCTTGGTGCTAATCTCAGTGAACCAGAAATTTTGGATCTAATGCAAGCTGCAGATGTTGACAACAGTGGCACAATTGACTACAGAGAATTCATAGCTGCAACATTACATTTAAACAAAGTTGACAGAGAAGATCATTTAGTTGCTGCTTTTTCATTTTTTGATAGAAGTGGAAGTGGCTACATCTCTCAAGATGAGCTTCAAAAAGCTTGTAAAGAATTTGGCATGGAGAATGTCTGCTTGGAGGAAATGATCCAAGAAGCTGATCAGAATAATgatggccgaatagactacaatgaattcgtggctatgatgcagagaggcaatgcagatttcagtcaaaacgTCCTCACTCCTCAAGAAAAACTGAAGAATTTGGGGGAACTGCTGAAAACTCCAAAGGACAACAAAGAAAATAAGAAACACAAGTTTTTGAGCACAATGGAATCTGAAAACGGGGTTGCTGTGGAGGAAGAGAAACGTGTTATTGGGGTAACAACCAAGGTGGAGAATGTAAAGAAAGAAGTTGAAAATGACTGCAATGGTGCAGAAATTATGACCAAGAATGAAGTATCTAAACCCACAGTAGTGGCTAAACGCCCCATTTCTGCTGGTGACAAAGTTGCAGTTGAAGCCTCCAAAACTTATGCAAATAAAAATTCAAAAGGTGCTACTACTAAGGAAACTGTTGGTAGAGCAAGTGTTGCTTCCAAGAACAACAAATATGCCAAAGATAAACCCATTTTGAAGGGTCCAAGTTCAATATCTCAAAAACAAAGGCCATCCCTTTCCCAAAGCCTTTCTTTCCCAGCCAAATCAGCTGGTGAAGATGCCATGCAGAAAAGCATTGATGGATATCTTGTGAAGCCTAAAGTTAGAAATAATCAAGGTAATGGGATTAGAGGTGAGGCCCCCATTCGTCATTTAAACAAGTCCACAAACTCTGAAGTCAACTCACTGGCAAAAACCAACACTGGCATGCCTGGTTTGAAACGCTCTGCGTTTGGAAGGTCCACTACAGTTGCTGCATTCACCAAGAGCCAAACTTCTGAGGCATCGTTACCCGTTGACCAGGTGTCAAACACAGCAAAAACTGCAAAAGCAGATAAAGAGAATGATGATTCTCATTCCACAACTTCAAGTGCTACTCCTTGTCTGAGAAGCAGTGGAAGTGGATTTTCCTTTAGATTGGAAGAAAGAGCTGAAAAGCGGAAGGAGTTTTTCTCAAAGTTGGAGGAAAAAATTCTAGCCAAGGAAGCAGAGAAAACCAACCTACAAGCTAAATCAAAGGAAAACCAAGAGGCAGAGATCAGGCTATTGAGGAAGAGTATGGCATTCAAAGCAACTCCAATGCCAAGTTTCTATAAGGAACCACCTCCCAAAGTTGAGCTGAAGAAGATACCAACAACACGCGCAAAATCCCCAAAGCTTGGAAGGCACAAAGAATCTGCTATGAACAACAATTCAGGAGAAGACAAGACTTGCTCCATTCCACGTGGGAAACAACAGCAGAATGATTCAAACAAGGTTAAGGGTCATAAAGATATGGTTTCAAAGAAACCAATCCGGAAAACCCAAGCCAAGGTGAAGTCTCAGGAAAATGTAACGCCAGAAAACAAAGAACAATGCCAAGATACACATGTTAACAATTCTGAATGCAAAAATGACATGGAGTTACAATCTGAAACAGGTCATGCACCAAATAGTACACTGCTTCTAAATTCAACTACACCTGAGCTTTTGTCATATGAGGTTACTGTTGGAGTGTAG 3144 0.3963 MGNNCLGSKTSNDALFPYVLPSSFWWIHQTSVKEISDAPSIVSRIQDTHFLENVQEKPPHVVKINNEEMKLKPVPLPTNKHQKETNMSSGEPIRQIQKMPHKVKRLPIGLQAESILKRKNGNFKEYYNLGQELGKGQYGTTFLCTEKATGKKYACKSIPKVKLAMDDDVEDVRREIEIMHHLEGCPNVISIKGSYEDGIAVYVVMELCGGGELFDRIVEKGHYTERKAAKLARTIVSVIEGCHSLGVIHRDLKPENFLFVDGNEESTLKAIDFGLSVFFKPGDIFKDVVGSPYYIAPEVLRRHYGPEVDVWSAGVIIYILLCGTPPFWGESEQEIFEEVLHGDLDFSSDPWLNISESAKDLVRKMLVRDPRKRMTAHEVLRHPWIQVDGVAPDKPLDSAVLSRLKQYSVMSKLKKMALRVIAENLSEEEIFELKVMFKMIDTDNSGHITLEKLKAGLKMLGANLSEPEILDLMQAADVDNSGTIDYREFIAATLHLNKVDREDHLVAAFSFFDRSGSGYISQDELQKACKEFGMENVCLEEMIQEADQNNDGRIDYNEFVAMMQRGNADFSQNVLTPQEKLKNLGELLKTPKDNKENKKHKFLSTMESENGVAVEEEKRVIGVTTKVENVKKEVENDCNGAEIMTKNEVSKPTVVAKRPISAGDKVAVEASKTYANKNSKGATTKETVGRASVASKNNKYAKDKPILKGPSSISQKQRPSLSQSLSFPAKSAGEDAMQKSIDGYLVKPKVRNNQGNGIRGEAPIRHLNKSTNSEVNSLAKTNTGMPGLKRSAFGRSTTVAAFTKSQTSEASLPVDQVSNTAKTAKADKENDDSHSTTSSATPCLRSSGSGFSFRLEERAEKRKEFFSKLEEKILAKEAEKTNLQAKSKENQEAEIRLLRKSMAFKATPMPSFYKEPPPKVELKKIPTTRAKSPKLGRHKESAMNNNSGEDKTCSIPRGKQQQNDSNKVKGHKDMVSKKPIRKTQAKVKSQENVTPENKEQCQDTHVNNSECKNDMELQSETGHAPNSTLLLNSTTPELLSYEVTVGV 1047
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01917 1047 ProSitePatterns EF-hand calcium-binding domain. 513 525 IPR018247 -
Gma19g01917 1047 SMART serkin_6 127 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma19g01917 1047 ProSitePatterns EF-hand calcium-binding domain. 547 559 IPR018247 -
Gma19g01917 1047 PANTHER SERINE/THREONINE-PROTEIN KINASE 50 571 - -
Gma19g01917 1047 PANTHER CALMODULIN-DOMAIN KINASE CDPK PROTEIN 50 571 - -
Gma19g01917 1047 MobiDBLite consensus disorder prediction 939 963 - -
Gma19g01917 1047 MobiDBLite consensus disorder prediction 804 821 - -
Gma19g01917 1047 CDD EFh 504 564 IPR002048 GO:0005509
Gma19g01917 1047 Gene3D Transferase(Phosphotransferase) domain 1 204 396 - -
Gma19g01917 1047 ProSiteProfiles Protein kinase domain profile. 127 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma19g01917 1047 Gene3D Phosphorylase Kinase; domain 1 109 203 - -
Gma19g01917 1047 Coils Coil 866 896 - -
Gma19g01917 1047 MobiDBLite consensus disorder prediction 986 1005 - -
Gma19g01917 1047 ProSitePatterns Protein kinases ATP-binding region signature. 133 156 IPR017441 GO:0005524
Gma19g01917 1047 ProSiteProfiles EF-hand calcium-binding domain profile. 428 463 IPR002048 GO:0005509
Gma19g01917 1047 MobiDBLite consensus disorder prediction 752 771 - -
Gma19g01917 1047 MobiDBLite consensus disorder prediction 679 733 - -
Gma19g01917 1047 SUPERFAMILY EF-hand 424 565 IPR011992 -
Gma19g01917 1047 Pfam Targeting protein for Xklp2 (TPX2) domain 851 920 IPR027329 -
Gma19g01917 1047 MobiDBLite consensus disorder prediction 929 1005 - -
Gma19g01917 1047 MobiDBLite consensus disorder prediction 964 980 - -
Gma19g01917 1047 SUPERFAMILY Protein kinase-like (PK-like) 125 386 IPR011009 -
Gma19g01917 1047 Pfam Protein kinase domain 127 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma19g01917 1047 CDD STKc_CAMK 127 384 - -
Gma19g01917 1047 SMART efh_1 468 496 IPR002048 GO:0005509
Gma19g01917 1047 SMART efh_1 504 532 IPR002048 GO:0005509
Gma19g01917 1047 SMART efh_1 538 566 IPR002048 GO:0005509
Gma19g01917 1047 SMART efh_1 432 460 IPR002048 GO:0005509
Gma19g01917 1047 MobiDBLite consensus disorder prediction 710 729 - -
Gma19g01917 1047 Pfam EF-hand domain pair 505 564 IPR002048 GO:0005509
Gma19g01917 1047 Pfam EF-hand domain pair 432 493 IPR002048 GO:0005509
Gma19g01917 1047 CDD EFh 432 492 IPR002048 GO:0005509
Gma19g01917 1047 ProSitePatterns EF-hand calcium-binding domain. 477 489 IPR018247 -
Gma19g01917 1047 ProSiteProfiles EF-hand calcium-binding domain profile. 464 499 IPR002048 GO:0005509
Gma19g01917 1047 ProSitePatterns Serine/Threonine protein kinases active-site signature. 247 259 IPR008271 GO:0004672|GO:0006468
Gma19g01917 1047 ProSiteProfiles EF-hand calcium-binding domain profile. 539 569 IPR002048 GO:0005509
Gma19g01917 1047 ProSiteProfiles EF-hand calcium-binding domain profile. 500 535 IPR002048 GO:0005509
Gma19g01917 1047 MobiDBLite consensus disorder prediction 679 694 - -
Gma19g01917 1047 Gene3D - 397 569 - -
Gma19g01917 1047 MobiDBLite consensus disorder prediction 804 849 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01917 Gma-Chr19 48375549 48390122 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g01917 1 567 EF-hand Containing Proteins AT5G04870 63.406 0.0 771
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gma19g01917 Pkinase 2.9e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01917 K13412 - gmx:100793377 1141.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01917 19 48375549 48390122 Gma03g01877 03 44744318 44746840 GST
Gma19g01917 19 48375549 48390122 Gma10g00784 10 10595539 10599178 PCT
Gma19g01917 19 48375549 48390122 Gma02g01817 02 42130293 42134186 PCT
Gma10g00784 10 10595539 10599178 Gma19g01917 19 48375549 48390122 PCT
Gma02g01817 02 42130293 42134186 Gma19g01917 19 48375549 48390122 PCT