Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01910 ATGGCTGCTACGGCTTCTGTTTCCTCTTCTATCTGCAACAGAATATACAACCTTTCCTTCACACACCCTTCCCTTTCACTCACCAGCAGCAACTTCCCTCAAAGACCCGTATCTCAAAAACCACTCAGTCTCAACCTCGAGTCCCAAAGTTTCGCTCTTTCCTTTCTCCCACTTCACCGTCTTCCCCCACCTTTCGCTGCCTTTGATGGGTTGGAAGTAGCTCAAGATACCACAGAGTCCCAACAAGACGAACCAGAACCAGAAACCGTTGAAAAAACAGAACAAGAGGAAGAGCAAAAGGTTTCAGACTCCAATGATGCTGGGAGGCTCTATGTTGGAAACTTGCCATATTCAATCACTAATTCCGAATTGGGCGAGCTCTTTGGAGAAGCTGGCACCGTGGCGTCTGTTGAGATTGTGTATGATCGTGTCACGGATAGAAGCAGGGGATTTGCATTTGTTACAATGGGGAGTGTTGAGGATGCTAAAGAGGCAATTCGAATGTTTGATGGCTCTCAAGTTGGTGGTAGGACTGTTAAGGTAAACTTCCCAGAGGTACCTAAAGGAGGGGAAAGGTTGGTAATGGGGTCAAAAATACTGAACAGCTACAGAGGCTTTGTAGACAGCCCTCACAAGATCTATGCTGGCAACCTAGGCTGGGGATTGACCTCACAGGGTCTTAGGGAAGCTTTTGCTGAGCAGCCAGGCGTATTGAGTGCCAAGGTCATCTATGAGAGGGACAGTGGAAGATCTCGAGGTTTTGGGTTTGTTTCTTTTGAAACTGCCGAATCTGCACGGGCTGCTTTGGACATCATGAATGGTGTGGAGGTACAAGGTCGGCCCTTGCGGTTGAATTTGGCTGAAGCAAGGACACCTTCATCTCCTCCAGTAATTCAGAAAAATGTAGGAAGCAATGTTGAAAGTTCGGAATTGGTGTCTAGTGCCAGCACATAA 954 0.4748 MAATASVSSSICNRIYNLSFTHPSLSLTSSNFPQRPVSQKPLSLNLESQSFALSFLPLHRLPPPFAAFDGLEVAQDTTESQQDEPEPETVEKTEQEEEQKVSDSNDAGRLYVGNLPYSITNSELGELFGEAGTVASVEIVYDRVTDRSRGFAFVTMGSVEDAKEAIRMFDGSQVGGRTVKVNFPEVPKGGERLVMGSKILNSYRGFVDSPHKIYAGNLGWGLTSQGLREAFAEQPGVLSAKVIYERDSGRSRGFGFVSFETAESARAALDIMNGVEVQGRPLRLNLAEARTPSSPPVIQKNVGSNVESSELVSSAST 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01910 317 PANTHER RNA-BINDING PROTEIN CP33, CHLOROPLASTIC 3 299 - -
Gma19g01910 317 SUPERFAMILY RNA-binding domain, RBD 105 184 IPR035979 GO:0003676
Gma19g01910 317 MobiDBLite consensus disorder prediction 85 104 - -
Gma19g01910 317 Gene3D - 69 191 IPR012677 -
Gma19g01910 317 CDD RRM_HP0827_like 109 185 - -
Gma19g01910 317 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 108 186 IPR000504 GO:0003723
Gma19g01910 317 Gene3D - 201 296 IPR012677 -
Gma19g01910 317 SMART rrm1_1 109 182 IPR000504 GO:0003723
Gma19g01910 317 SMART rrm1_1 212 285 IPR000504 GO:0003723
Gma19g01910 317 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 213 283 IPR000504 GO:0003723
Gma19g01910 317 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 110 180 IPR000504 GO:0003723
Gma19g01910 317 PANTHER OS02G0815200 PROTEIN 3 299 - -
Gma19g01910 317 MobiDBLite consensus disorder prediction 74 107 - -
Gma19g01910 317 SUPERFAMILY RNA-binding domain, RBD 208 294 IPR035979 GO:0003676
Gma19g01910 317 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 211 289 IPR000504 GO:0003723
Gma19g01910 317 MobiDBLite consensus disorder prediction 293 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01910 Gma-Chr19 48286233 48288081 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g01910 95 290 Eukaryotic Initiation Factors Gene Family AT3G16380 32.500 1.06e-24 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01910 - - gmx:100814852 599.742
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01910 19 48286233 48288081 Gma03g01866 03 44641113 44643599 GST
Gma19g01910 19 48286233 48288081 Gma20g00824 20 33244797 33252652 PCT