Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01908 ATGAACGACTTGTTATCGGGTTTGTTCTCAAAGGGAAAACAACAACAGCAGCAGCAACAACAACGACATCAGCATGTGATCGAGATAACACAAGGTGGTGGCATGGACTTGGACAAGTTCTTCCAAGAAGTGGAATCAGTGAAGGAGGACTTGAAGGAGTTAGAGCGTCTCCACCTAAGCCTTCGTGCTACAAACCAACACGGAAAAGCGCTTCACAGCCCAAAGGGCGTTAGGGAGCTTAGGTCACGCATGGACCTGGACGTGGCTCTCTCTCTCACCAAAGCGAAGCTCGTGAAGGGTCGCTTGGCGGCTCTTCACCGAACCAACCAAGCGACCCTCTCCTTGCCCGGTTGCGGGCCCGGTTCATACTCCGACCGGACCCGAACCGCGCTTGTGGGGGCCTTGACGAAGAACCTGAGACAGTCCATGGAGAGTTTCAATAAGCTGAGAGAGCAGATATCGTACGAGTACAGAGACACTGTGCAACGTAGATACTACGCTGTCACTGGAGAAAACCCTGATCAAGAAACCATTGACCTCCTCATCTCCACGGGTGAGAGTGAAACTTTCTTACAGAAAGCCATCCAACAGCAAGGGAGAGCCACTATCATGGACACCATCCAAGAGATTCAGGAGAGGCACGACACGATGAAAGAGATAGAGAGAAATCTACACGAGCTGCACCAAGTGTTCATGGACATGGCAGTGCTGATCCAACACCAGGGTGAACACTTGGATAACATAGAGAGCCACATGGAACTTGCAAACTCCTTCGTGAGCATAGGGGTGCAGCATTTGCAGGTTGTGAGGAGTCATCAGAAGAACACCCGCAACTGCACTTGTTTCGCCATACTTCTCTTCATTATCGTGTTGGTCATAGTTCTCCCTATTGTTTTCAGAAATTGA 906 0.5022 MNDLLSGLFSKGKQQQQQQQQRHQHVIEITQGGGMDLDKFFQEVESVKEDLKELERLHLSLRATNQHGKALHSPKGVRELRSRMDLDVALSLTKAKLVKGRLAALHRTNQATLSLPGCGPGSYSDRTRTALVGALTKNLRQSMESFNKLREQISYEYRDTVQRRYYAVTGENPDQETIDLLISTGESETFLQKAIQQQGRATIMDTIQEIQERHDTMKEIERNLHELHQVFMDMAVLIQHQGEHLDNIESHMELANSFVSIGVQHLQVVRSHQKNTRNCTCFAILLFIIVLVIVLPIVFRN 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01908 301 SUPERFAMILY t-snare proteins 34 260 IPR010989 GO:0016020|GO:0016192
Gma19g01908 301 SMART SynN_4 32 158 IPR006011 GO:0016020
Gma19g01908 301 CDD SynN 37 194 IPR006011 GO:0016020
Gma19g01908 301 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 207 269 IPR000727 -
Gma19g01908 301 PANTHER SYNTAXIN-121 14 296 - -
Gma19g01908 301 PANTHER SYNTAXIN 14 296 IPR045242 -
Gma19g01908 301 Pfam Syntaxin 39 242 IPR006011 GO:0016020
Gma19g01908 301 CDD SNARE_syntaxin1-like 206 267 - -
Gma19g01908 301 Gene3D - 37 164 - -
Gma19g01908 301 Pfam SNARE domain 245 295 IPR000727 -
Gma19g01908 301 ProSitePatterns Syntaxin / epimorphin family signature. 213 252 IPR006012 GO:0005484|GO:0006886|GO:0016020
Gma19g01908 301 SMART tSNARE_6 202 269 IPR000727 -
Gma19g01908 301 Gene3D - 196 299 - -
Gma19g01908 301 Coils Coil 37 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01908 Gma-Chr19 48277700 48279270 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g01908 33 281 SNARE and Associated Proteins AT3G11820 62.651 4.04e-115 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01908 K08486 - gmx:100790221 563.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01908 19 48277700 48279270 Gma19g01908 19 48277700 48279270 ECH
Gma19g01908 19 48277700 48279270 Gma03g01865 03 44634476 44636464 GST
Gma19g01908 19 48277700 48279270 Gma02g01843 02 42585103 42587850 PCT
Gma02g01843 02 42585103 42587850 Gma19g01908 19 48277700 48279270 PCT