Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01904 ATGAACGAAATCGATGTTCCTTCGTTCTTTCTCTGCCCCATTTCGCTAGATATCATGAAGGATCCAGTGACGGTCTCTACGGGCATCACCTACGACCGTGAAAGCATCGAAACCTGGCTGTTCTCGAAGAAAAACACGACATGCCCCATTACCAAACTGCCCTTGATAGATTACACCGATCTCACACCAAACCACACCCTTCGGAGACTCATCCAAGCGTGGTGTTCCATGAACGCTTCTCACGGCATCGAAAGGATTCCAACCCCTAAACCCCCCGTTAACAAGAACCAAATTTCGAAGCTTCTCAAAGACGCTTCTCATTCCCCTCTCACATGCCTCAGAAGACTCAAATCCATCTCTTCCGGAAGCGAAACAAATAAGCGGTGCATGGAGGCTTCTGGCGCTGTTGAGTTTCTAGCATCAATTATAATCAACACCAACCGCAACATTGATTCTTCACATGAGGCTGACTCAAACGACGGATCTGGATTCGAGTTGAAAACAAGTGCATGCGATGAAGCGTTGAGTTTGCTTCATAATCTTCATTTATCCGAACAAGGGTTGAAGACTCTCTTAAGCTTCAGAAACGGCGAGTTTATTGAGTCTTTAACAAGAGTCATGCAAAAGGGGTTCTTTGAATCACGCGCTTATGCTGTGTTCTTGTTGAAATCTATTTCCGAAGTGGCTGAACCAGTGCAACTATTGCATCTAAGACAAGAACTTTTTGTCGAACTGGTACAAGTCCTGAAGGATCAAATTTCACAGAAGACATCAAAGGCGACCCTTCAAACCCTGATCCAATTCTCTCCTTGGGGGAGGAACAGGATCAGAGCTGTGGAAGCAGGTGCTGTTCCTGTTTTGATTGAGCTTCTTCTCGATTGCAAGGAGAGAAAGCCTTGTGAGATGATGCTGGTGTTGTTGGAGCTGCTATGCCAGTGTGCTGAGGGAAGAGCAGAACTTTTGAGCCATGCAGCAGGTCTTGCCATTGTGTCCAAAAAGATTCTAAGGGTTTCGACTTTGGCGAATGATAGAGCTGTTAAGATTATTCTGTCTCTTTCGAGGTTCTCTGCGACTCCACATGTTGTTCAAGAAATGCTGAAACTCGGTGTGGTCGCGAAATTGTGCTTGGTGCTTCAGGTGGATAGTGGAAACAGGGCTAAGGAAAAAGCTAGAGAGATACTCAAATTGCATGCTCGGGCGTGGAGGAATTCTCCATGCATACCGAACAATTTGCTTAATTCATACCCGAATTATGTGTGA 1260 0.4563 MNEIDVPSFFLCPISLDIMKDPVTVSTGITYDRESIETWLFSKKNTTCPITKLPLIDYTDLTPNHTLRRLIQAWCSMNASHGIERIPTPKPPVNKNQISKLLKDASHSPLTCLRRLKSISSGSETNKRCMEASGAVEFLASIIINTNRNIDSSHEADSNDGSGFELKTSACDEALSLLHNLHLSEQGLKTLLSFRNGEFIESLTRVMQKGFFESRAYAVFLLKSISEVAEPVQLLHLRQELFVELVQVLKDQISQKTSKATLQTLIQFSPWGRNRIRAVEAGAVPVLIELLLDCKERKPCEMMLVLLELLCQCAEGRAELLSHAAGLAIVSKKILRVSTLANDRAVKIILSLSRFSATPHVVQEMLKLGVVAKLCLVLQVDSGNRAKEKAREILKLHARAWRNSPCIPNNLLNSYPNYV 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01904 419 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
Gma19g01904 419 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB23 1 416 - -
Gma19g01904 419 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 85 IPR013083 -
Gma19g01904 419 Gene3D - 98 404 IPR011989 -
Gma19g01904 419 PANTHER WDSAM1 PROTEIN 1 416 IPR045185 GO:0061630
Gma19g01904 419 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Gma19g01904 419 Pfam U-box domain 6 78 IPR003613 GO:0004842|GO:0016567
Gma19g01904 419 SUPERFAMILY RING/U-box 4 82 - -
Gma19g01904 419 CDD RING-Ubox_PUB 10 52 IPR045210 -
Gma19g01904 419 SUPERFAMILY ARM repeat 111 394 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01904 Gma-Chr19 48231923 48233182 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g01904 2 416 U-box Gene Family AT3G52450 56.193 8.95e-172 486
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01904 - - gmx:100809839 818.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01904 19 48231923 48233182 Gma19g01904 19 48231923 48233182 ECH
Gma19g01904 19 48231923 48233182 Gma03g01863 03 44594085 44595852 GST
Gma19g01904 19 48231923 48233182 Gma02g01857 02 42914685 42916123 PCT
Gma10g00758 10 10017763 10019615 Gma19g01904 19 48231923 48233182 PCT
Gma02g01851 02 42735299 42737024 Gma19g01904 19 48231923 48233182 PCT