Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01898 ATGAACGAAATCGATGTTCCTTCGTTCTTTCTCTGCCCCATTTCGCTAGATATCATGAAGGATCCAGTGACGGTCTCAACGGGCATCACCTACGACCGTGAAAGCATCGAAACCTGGCTGTTCTCGAAGAAAAACACGACATGCCCCATTACCAAACTGCCCTTGATAGATTACACCGATCTCACACCAAACCACACCCTTCGTAGACTCATCCAAGCGTGGTGTTCCATGAACGCTTCTCACGGCATCGAAAGGATCCCAACCCCTAAACCCCCCGTTAACAAGAACCAAATTTCGAAGCTTCTCAAAGACGCTTCTCATTCCCCTCTCACATGCCTCAGAAGACTCAAATCCATCTCTTCCGGAAGCGAAACAAATAAGCGGTGCATGGAGGCTTCTGGCGCTGTTGAGTTTCTAGCATCAATTGTAATCAACACCAACCGCAACATTGATTCTTCACATGAGGCTGACTCAAACGACGGATCTGGATTCGAGTTGAAAACAAGTGCATGCGATGAAGCGTTGAGTTTGCTTCATAATCTTCATTTATCCGAACAAGGGTTGAAGACTCTCTTAAGCTTCAGAAACGGCGAGTTTATTGAGTCTTTAACAAGAGTCATGCAAAAGGGGTTCTTTGAATCACGCGCTTATGCTGTGTTCTTGTTGAAATCTATTTCCGAAGTGGCTGAACCAGTGCAACTATTGCATCTAAGACAAGAACTTTTTGTCGAACTGGTACAAGTCCTGAAGGATCAAATTTCACAGAAGACATCAAAGGCGACCCTTCAAACCCTGATCCAATTCTCTCCTTGGGGGAGGAACAGGATCAGAGCTGTGGAAGCAGGTGCTGTTCCTGTTTTGATTGAGCTTCTTCTCGATTGCAAGGAGAGAAAGCCTTGTGAGATGATGCTGGTGTTGTTGGAGCTGCTATGCCAGTGTGCTGAGGGAAGAGCAGAACTTTTGAGCCATGCAGCAGGTCTTGCCATTGTGTCCAAAAAGATTCTAAGGGTTTCGACTTTGGCGAATGATAGAGCTGTTAAGATTATTCTGTCTCTTTCGAGGTTCTCTGCGACTCCACATGTTGTTCAAGAAATGCTGAAACTCGGTGTGGTCGCGAAATTGTGCTTGGTGCTTCAGAAGAATCCATTCGATGTCCGAAAAATAATGGCATGGAAACAACTGCCCGATCAATCTGAAGCTGCGGCGAGAGCTGGATTAATGACAACAGATAATTAA 1236 0.4563 MNEIDVPSFFLCPISLDIMKDPVTVSTGITYDRESIETWLFSKKNTTCPITKLPLIDYTDLTPNHTLRRLIQAWCSMNASHGIERIPTPKPPVNKNQISKLLKDASHSPLTCLRRLKSISSGSETNKRCMEASGAVEFLASIVINTNRNIDSSHEADSNDGSGFELKTSACDEALSLLHNLHLSEQGLKTLLSFRNGEFIESLTRVMQKGFFESRAYAVFLLKSISEVAEPVQLLHLRQELFVELVQVLKDQISQKTSKATLQTLIQFSPWGRNRIRAVEAGAVPVLIELLLDCKERKPCEMMLVLLELLCQCAEGRAELLSHAAGLAIVSKKILRVSTLANDRAVKIILSLSRFSATPHVVQEMLKLGVVAKLCLVLQKNPFDVRKIMAWKQLPDQSEAAARAGLMTTDN 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01898 411 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
Gma19g01898 411 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB23 1 380 - -
Gma19g01898 411 SUPERFAMILY ARM repeat 111 391 IPR016024 -
Gma19g01898 411 SUPERFAMILY RING/U-box 4 82 - -
Gma19g01898 411 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Gma19g01898 411 CDD RING-Ubox_PUB 10 52 IPR045210 -
Gma19g01898 411 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 85 IPR013083 -
Gma19g01898 411 PANTHER WDSAM1 PROTEIN 1 380 IPR045185 GO:0061630
Gma19g01898 411 Gene3D - 95 406 IPR011989 -
Gma19g01898 411 Pfam U-box domain 6 78 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01898 Gma-Chr19 48143442 48146726 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g01898 3 379 U-box Gene Family AT3G52450 55.528 2.74e-149 429
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01898 - - gmx:100809839 736.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01898 19 48143442 48146726 Gma19g01898 19 48143442 48146726 ECH