Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01896 ATGTGTGATGTCAAGTTTCTCAATAAAGAGCTTGTTCGTGTGGCTTCCTTTTCAGACCATGAAGCATTTGACCATCCTGTGATATGTCTTGTAGCTGTTTCATCAAAGGATGAACAACCTATTAGCAGATTTGTTGACCTTTTTAATACCAACAAGCTTCCTTCCCTTCTTAATGATGGTGCAATGGATCCAAAAGTTTCAAAGCATTACTTGTTAGTGCATGATAATCAAGATGGCCCTGCAGACAGAGCAAGTAAAAGATTGACAGATATGAGGAGTACATTTGGGGCAAGTGACTGTTCGTTGCTTTGCATTAATTCTTCCCTGGATGCTCCAATCAAAAATCAAGATAATCCTTGGGCTTCATATATAACTGATGCCTCACCTACTCCTAGTCAAGATCTTGGTTGCTTTCTCAACATTGATGATATCAACGAGATAAAAGATCTAATGCAAGATTTAGCATCCAAGTATGACTTTAATTCCATTGAATCCCAGATTCGAGTTTTGGGTGATTATGCTTTCATGTTAGGAGATTATGAAGTTGCCTTGTCAAATTATCGCCTAATTTCCACCGATTACAAGATTGATAAAGCCTGGAAGCGTTATGCTGGTGTGCAGATGCAGTCCAAGATTAGCGCTTTCTTCAAATCTACTACCTCCGATTCCTCTTCCGTCTCTGCCGACAATGACGACGACTTGTCCATCTGGGAGAAGCAGCAACACCATATCATCAACACCTACACCCGAAGGCCTCCAAACCCTAACGCCGTTATTCCTTCGGTGGTCAAAAACAAGAAGAGGAGCTACGCCCAATTCCACCTCGATTTCGGCCAATCCGATTTCCTCTTACGCGCCTGTTCCACTTGCGGAATCAATTTCACTCCCGGCGACCCAGACGACGAGAAATCCCACAACCACTTTCACAAATCCTACACCCAGGGGATACAATTCAGAGGTTGGACCAAAGAAAATGTTATCCCTCTTCCCACCCTCGAAGCGGGTCGAATCATTTTGGTTTCGGAGATCGACCTCACTTCTCACAGAAGAATAGTTGAGCAGGTCGTGAGTATGATGGAAATTGAGCTTGGGTGTGGATGGATCCTTCACGACCTCTTTAAGGTGTATCTGTTTGTTTCTCTTCACAGGGTTGTTGGGTGCCTCGTTGCAGAACCAATTGAAAAGGCATTCAAAGTTGTGTCTGGCTCTTCTGATAGCGTGAAGAAAAGGGAAGTGAGGACGCGTTCTACCACTCTTCGGTTTGGGAATGTTATTTTCCAAAGGGAGGTTGAAAAAAAAGTTGCTTCCTTGAGTGATTCTGAGAGGATGGAAGGTGCAATCTTCTGTGATAGCAAACCAACCACCGCTGCTTGTGGCATTAGGGCCATTTGGGTTGCTCCCTCTAACAGAAGAAAAGGAATTGCAAGCAAATTGCTTGATGCCGTGAGGAAGAGTTTCTGCAAGGATCTTGAGCTTGAACGTTCTCAACTAGCATTCTCTCAGCCAACCTCAGCTGGAAAGGCATTGGCAACAAGTTACACTGGCACTGGATCATTCTTGGCGTATTAA 1569 0.4398 MCDVKFLNKELVRVASFSDHEAFDHPVICLVAVSSKDEQPISRFVDLFNTNKLPSLLNDGAMDPKVSKHYLLVHDNQDGPADRASKRLTDMRSTFGASDCSLLCINSSLDAPIKNQDNPWASYITDASPTPSQDLGCFLNIDDINEIKDLMQDLASKYDFNSIESQIRVLGDYAFMLGDYEVALSNYRLISTDYKIDKAWKRYAGVQMQSKISAFFKSTTSDSSSVSADNDDDLSIWEKQQHHIINTYTRRPPNPNAVIPSVVKNKKRSYAQFHLDFGQSDFLLRACSTCGINFTPGDPDDEKSHNHFHKSYTQGIQFRGWTKENVIPLPTLEAGRIILVSEIDLTSHRRIVEQVVSMMEIELGCGWILHDLFKVYLFVSLHRVVGCLVAEPIEKAFKVVSGSSDSVKKREVRTRSTTLRFGNVIFQREVEKKVASLSDSERMEGAIFCDSKPTTAACGIRAIWVAPSNRRKGIASKLLDAVRKSFCKDLELERSQLAFSQPTSAGKALATSYTGTGSFLAY 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01896 522 Pfam ER-Golgi trafficking TRAPP I complex 85 kDa subunit 157 224 IPR024420 -
Gma19g01896 522 Pfam ER-Golgi trafficking TRAPP I complex 85 kDa subunit 62 118 IPR024420 -
Gma19g01896 522 PANTHER N-ACETYLTRANSFERASE ECO 208 522 IPR033257 GO:0000070|GO:0007062|GO:0016407|GO:0045132
Gma19g01896 522 Gene3D - 386 509 - -
Gma19g01896 522 Pfam ESCO1/2 acetyl-transferase 455 522 IPR028009 -
Gma19g01896 522 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 440 494 IPR016181 -
Gma19g01896 522 Pfam zinc-finger of acetyl-transferase ESCO 272 310 IPR028005 -
Gma19g01896 522 CDD NAT_SF 446 497 - -
Gma19g01896 522 PANTHER N-ACETYLTRANSFERASE ECO 208 522 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01896 Gma-Chr19 48132148 48136746 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Gma19g01896 TRAPPC-Trs85 1.7e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01896 K11268 - gmx:100811441 673.315
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01896 19 48132148 48136746 Gma19g01896 19 48132148 48136746 ECH
Gma19g01896 19 48132148 48136746 Gma03g01856 03 44503549 44504013 GST