Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01878 ATGGGCAAGAAAATGAAGCTCCCTTCCTCTTCTTGGCCCTGGCCCTCCTGCCACCAACCGCGAACCCTCTCTTTCCGAGCCCAAAACGACGCCGCATACTTGGACACGCTGGAGAGCTCCGAGACTTCCTTCTTCACCGTCTCCCCTGACTCCGGAAGCTTCTCAACTGCCTCAGAAGAAGATTCTAGAAGACCCGACTCACTAGAGACCGTCATTCGCGGCTTGCGTTCCGACCGTCTGTTCTTCGAGCCAGACGAGACTAGTTCCATATTAGAAGCCAAAGCAGCAGCAGCAACAACAACAACAACAACAACGTTGCCGTTCAAAGACAGCGTTGTCATGTCCGTGGACTCCCAAGACCCTTACGTCGATTTCCGCAGGTCCATGGAGGAGATGGTGGAGGCGCAGTGCGTCAAGGGCTGGGAGGGTCTCCAAGAGCTTCTGTCTTGGTATTTGAAAGTCAACGGTAAAACCAACCACGGCTATATCGTTGGTGCTTTCGTTGATTTATTGTTCGCTTCTTCTTCCTCACTAGTTTCTTCTTCTGACAATAACTCCCACTCTCCTTCTTCCCCTTTATCGTTTTATAGCTCTTCCTCTTGCAGCACTCGCTGTGTTTCTTGTTTGGAAGCTGAGGTCGAGGTTCATAATAATGATATAGCTACTACTTCTTCTTTCTTGTTAGAACAAGTTAGGGAAGACCAGGCTTCATCTTCTTCTTCTACTTCTACTTCCTCTTTGAATTAA 747 0.49 MGKKMKLPSSSWPWPSCHQPRTLSFRAQNDAAYLDTLESSETSFFTVSPDSGSFSTASEEDSRRPDSLETVIRGLRSDRLFFEPDETSSILEAKAAAATTTTTTTLPFKDSVVMSVDSQDPYVDFRRSMEEMVEAQCVKGWEGLQELLSWYLKVNGKTNHGYIVGAFVDLLFASSSSLVSSSDNNSHSPSSPLSFYSSSSCSTRCVSCLEAEVEVHNNDIATTSSFLLEQVREDQASSSSSTSTSSLN 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01878 248 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 9 216 IPR038933 GO:0045892
Gma19g01878 248 Pfam Transcriptional repressor, ovate 118 172 IPR006458 -
Gma19g01878 248 ProSiteProfiles OVATE domain profile. 112 173 IPR006458 -
Gma19g01878 248 MobiDBLite consensus disorder prediction 48 67 - -
Gma19g01878 248 PANTHER OVATE TRANSCRIPTIONAL REPRESSOR 9 216 - -
Gma19g01878 248 TIGRFAM A_thal_3678: uncharacterized plant-specific domain TIGR01568 112 172 IPR006458 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01878 Gma-Chr19 48010169 48010915 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Gma19g01878 Ovate 3.2e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01878 - - gmx:100784899 393.275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01878 19 48010169 48010915 Gma20g01087 20 37538076 37538795 ECH
Gma19g01878 19 48010169 48010915 Gma19g01878 19 48010169 48010915 ECH
Gma19g01878 19 48010169 48010915 Gma03g01837 03 44389209 44390435 GST
Gma19g01878 19 48010169 48010915 Gma10g00714 10 8642533 8643336 PCT
Gma19g01878 19 48010169 48010915 Gma02g01897 02 44026741 44027487 PCT
Gma10g00714 10 8642533 8643336 Gma19g01878 19 48010169 48010915 PCT
Gma02g01897 02 44026741 44027487 Gma19g01878 19 48010169 48010915 PCT