Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01869 ATGTCATCGATGCACCACTACTCACCGGAAACAACACTATACTGGACCAGCGACCACCAGCAACAACAACAACAACAACAACAAGAAGCTGCCACGTGGCTTAGTAATTCCCACACTCCCCGTTTCAACCTGAACGAAGACGACGACGAGGAAGACGACGTTGTCGTTTCGGACAAGGCTACTAATAATTTGGCGCAAGAACAGGAGAAAGAAGCGATGTTCGAGAAGCCGTTGACGCCGAGCGACGTCGGGAAGCTGAACCGGCTCGTGATCCCGAAACAGCACGCGGAGAAGTACTTCCCTCTTGACTCGTCCGGCGGTGACTCGGCGGCGGCGAAAGGGCTCTTGCTGAGTTTCGAGGACGAGTCGGGGAAGTGCTGGCGCTTCCGTTACTCTTATTGGAACAGTAGCCAGAGTTACGTTTTGACCAAAGGCTGGAGCCGTTACGTCAAAGACAAACGCCTCCACGCAGGCGACGTCGTTTTGTTCCACAGACACCGCGCCCACCCTCAACGCTTCTTCATCTCCTGCACCCGCCACCAACCCAACCCCAACCCTCCCGCGCACGTTAGCATCAGATCCTCCTCCTTCTACTCTGCGCTCCCAGCTTATCCTACGCACCATCATCATCACCTCCCCTTCCCATACCAACCTCACTCTCTTCACGCACCAGGTGGAGGGTCCCAAGGACAGAACGAAACGACACCAGGAGGGAACAGTTCAAGTGGCAGGGTGCTGAGGCTGTTTGGGGTGAACATGGAATGCCAACCTGATAATGATAATGATTCCCAAAACTCCACACATGAATGCTCCTACACCCACTTATACCACCATCAAACCTCTTCTTATCCTTCTTCAAACCCTCACCATCACATGCTACCTCAACAACCATAA 894 0.5347 MSSMHHYSPETTLYWTSDHQQQQQQQQQEAATWLSNSHTPRFNLNEDDDEEDDVVVSDKATNNLAQEQEKEAMFEKPLTPSDVGKLNRLVIPKQHAEKYFPLDSSGGDSAAAKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLHAGDVVLFHRHRAHPQRFFISCTRHQPNPNPPAHVSIRSSSFYSALPAYPTHHHHHLPFPYQPHSLHAPGGGSQGQNETTPGGNSSSGRVLRLFGVNMECQPDNDNDSQNSTHECSYTHLYHHQTSSYPSSNPHHHMLPQQP 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01869 297 Gene3D - 68 187 IPR015300 -
Gma19g01869 297 Pfam B3 DNA binding domain 74 177 IPR003340 GO:0003677
Gma19g01869 297 MobiDBLite consensus disorder prediction 1 41 - -
Gma19g01869 297 MobiDBLite consensus disorder prediction 222 241 - -
Gma19g01869 297 ProSiteProfiles B3 DNA-binding domain profile. 74 181 IPR003340 GO:0003677
Gma19g01869 297 MobiDBLite consensus disorder prediction 1 54 - -
Gma19g01869 297 SUPERFAMILY DNA-binding pseudobarrel domain 70 181 IPR015300 -
Gma19g01869 297 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 16 273 IPR044800 GO:0003700
Gma19g01869 297 SMART B3_2 74 181 IPR003340 GO:0003677
Gma19g01869 297 CDD B3_DNA 73 168 IPR003340 GO:0003677
Gma19g01869 297 MobiDBLite consensus disorder prediction 224 241 - -
Gma19g01869 297 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0156000 16 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01869 Gma-Chr19 47884486 47886143 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g01869 70 262 RAV Transcription Factor Family AT5G06250 51.456 1.31e-60 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gma19g01869 B3 1.7e-27 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01869 - - gmx:100781153 605.134
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01869 19 47884486 47886143 Gma19g01869 19 47884486 47886143 ECH
Gma19g01869 19 47884486 47886143 Gma03g01828 03 44290675 44292336 GST
Gma19g01869 19 47884486 47886143 Gma10g00698 10 7933076 7936031 PCT
Gma19g01869 19 47884486 47886143 Gma02g01904 02 44138028 44140697 PCT