Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01860 ATGGAAAATATGCCACCAGGTTATCGTTTCTACCCCACAGAAGAGGAGCTGATTTCGTTCTATCTTCACAACAAGCTTGAAGGAGAAAGGGAAGACATGAATCGAGTTATTCCAGTCgttgatatatacgactacaacccatctgaactcccacAAATTTCAGGAGAGGCAAGTATGAGAGACACGGAGCAATGGTTTTTTTTCATTCCGAGGCGCGAGAGTGAAGCGAGAGGAGGGAGACCAAAGCGTCTCACAACTACAGGGTACTGGAAGGCAACAGGGTCTCCTAATCATGTTTATTCTTCGGATAATCGCATCATCGGAATTAAAAGGACTATGGTTTTCTATAGTGGAAGAGCTCCAAACGGAACCAAAACCGATTGGAAGATGAATGAGTACACTGCCATCAAAACATCATCCTCTAGTCCCACGCTAAGGAAGGAATTCAATTTATGCAGAGTGTACAAAAAATCAAAGTGTTTGACAGCATTTGATAGACGACCACCGCCAAGGAGGGACACAGAAAGCTATTCGGGTGCTCAAAATGTAGAAGAGCAACAAAAGGGTTCAACATCATATGATGATTATCATCATAAAATGGTGGAGAGAAGTGCAACGTGTTCACCAGCAGAGAGCTCTTCCTCCGGAGACCATGACCAACCCCCTCTTCACGGTGAGGAAGCTACTCAAATGGATGTTGACAACAACGACGACCCTTTTTTGGATTGGGAGAAAGTGGATATGTTCTTGGGATCAGAACCATGA 765 0.4209 MENMPPGYRFYPTEEELISFYLHNKLEGEREDMNRVIPVVDIYDYNPSELPQISGEASMRDTEQWFFFIPRRESEARGGRPKRLTTTGYWKATGSPNHVYSSDNRIIGIKRTMVFYSGRAPNGTKTDWKMNEYTAIKTSSSSPTLRKEFNLCRVYKKSKCLTAFDRRPPPRRDTESYSGAQNVEEQQKGSTSYDDYHHKMVERSATCSPAESSSSGDHDQPPLHGEEATQMDVDNNDDPFLDWEKVDMFLGSEP 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01860 254 MobiDBLite consensus disorder prediction 175 189 - -
Gma19g01860 254 SUPERFAMILY NAC domain 2 157 IPR036093 GO:0003677|GO:0006355
Gma19g01860 254 MobiDBLite consensus disorder prediction 190 204 - -
Gma19g01860 254 ProSiteProfiles NAC domain profile. 4 157 IPR003441 GO:0003677|GO:0006355
Gma19g01860 254 Gene3D NAC domain 13 161 IPR036093 GO:0003677|GO:0006355
Gma19g01860 254 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 4 248 - -
Gma19g01860 254 MobiDBLite consensus disorder prediction 163 254 - -
Gma19g01860 254 Pfam No apical meristem (NAM) protein 5 134 IPR003441 GO:0003677|GO:0006355
Gma19g01860 254 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 4 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01860 Gma-Chr19 47801920 47803966 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g01860 2 247 NAC Transcription Factor Family AT3G44350 45.020 9.26e-75 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gma19g01860 NAM 2.1e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01860 - - gmx:100777948 528.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01860 19 47801920 47803966 Gma19g01860 19 47801920 47803966 ECH
Gma19g01860 19 47801920 47803966 Gma03g01818 03 44209210 44211421 GST