Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01846 ATGCCTGGGACGAGGCAGAGAGATACAGCTCAAAATCTAGAGTCACCAGAGGGGAACAGTGAGCTTGAGAAACCTACAGATTCTGAGGAGCAAGTAGACTTTGATGGGGACAATGATCAAGAGGAGACAATGGAGGAAGTTGAGTATGAAGAAGTAGAGGAGGAGGAAGAAGAGAAGTTGAGAAAAAGAAGCATGCTGAGCTTCTTGCACTTCCACCTCATGGGTCTGAGGATAATGAAGGGAAAAGAAACCAGTGAAGCAAAAGGTTATGCTTTTGTGACCTTCAAGACAAAGGAATTGGCATATAAGGCTATTAAGGAGCTGAACAACTCTGAATTTAAGGTAAAATTAGTGTATGTAAAGAACCTTCCAGAAAACATTACTCAGGATCGTCTTAAGGAGCTGTCTGAACATCATGGAAAGATCACAAAAGTGGTTCTCCCTTCTGCTAAAACCGGGCAAGAAAAGAGCAGATTTGGTTTTGTTCACTTTGCTGAAAGGTCAAGTGCCATGAAGGCTTTGAAGAACGCAGAGAAATATGAAATTGATGGACAAACGTTGGAGTGTTCACTAGCAAAGCCACAAGCAAATTCACATAAGCCAGCTGTACTTCCTGCTTATCCACCTCATCTTGGTTATGGTGGTATGATTGGTAGTGCTATAGGTGCAGGATTTGGTACTGCTGGCTTTGCACAAGTTGCTCTTCGCCTGAAATATGCTTCCCATGAACTCACTGCTGCAACTGTGCTGTCTCACCTTGATAGGTTACAGGAATGGACTTGTGTTGCCCTCATCCCGTGGAGAAACAGATATGAATCACAGTAA 825 0.4327 MPGTRQRDTAQNLESPEGNSELEKPTDSEEQVDFDGDNDQEETMEEVEYEEVEEEEEEKLRKRSMLSFLHFHLMGLRIMKGKETSEAKGYAFVTFKTKELAYKAIKELNNSEFKVKLVYVKNLPENITQDRLKELSEHHGKITKVVLPSAKTGQEKSRFGFVHFAERSSAMKALKNAEKYEIDGQTLECSLAKPQANSHKPAVLPAYPPHLGYGGMIGSAIGAGFGTAGFAQVALRLKYASHELTAATVLSHLDRLQEWTCVALIPWRNRYESQ 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01846 274 PANTHER - 76 116 - -
Gma19g01846 274 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 116 194 IPR000504 GO:0003723
Gma19g01846 274 SUPERFAMILY RNA-binding domain, RBD 75 195 IPR035979 GO:0003676
Gma19g01846 274 SMART rrm1_1 117 190 IPR000504 GO:0003723
Gma19g01846 274 SMART rrm1_1 57 116 IPR000504 GO:0003723
Gma19g01846 274 PANTHER GEO13361P1-RELATED 114 235 - -
Gma19g01846 274 PANTHER GEO13361P1-RELATED 12 59 - -
Gma19g01846 274 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 45 122 IPR000504 GO:0003723
Gma19g01846 274 PANTHER - 12 59 - -
Gma19g01846 274 Gene3D - 48 117 IPR012677 -
Gma19g01846 274 MobiDBLite consensus disorder prediction 1 56 - -
Gma19g01846 274 MobiDBLite consensus disorder prediction 1 19 - -
Gma19g01846 274 Gene3D - 118 201 IPR012677 -
Gma19g01846 274 PANTHER - 114 235 - -
Gma19g01846 274 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 118 187 IPR000504 GO:0003723
Gma19g01846 274 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 75 114 IPR000504 GO:0003723
Gma19g01846 274 MobiDBLite consensus disorder prediction 32 55 - -
Gma19g01846 274 PANTHER GEO13361P1-RELATED 76 116 - -
Gma19g01846 274 Coils Coil 38 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01846 Gma-Chr19 47716180 47722968 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g01846 84 183 Eukaryotic Initiation Factors Gene Family AT4G34110 33.065 3.42e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01846 K13161 - gmx:100798476 207.223
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01846 19 47716180 47722968 Gma19g01846 19 47716180 47722968 ECH
Gma19g01846 19 47716180 47722968 Gma03g01807 03 44117525 44124881 GST