Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01840 ATGAGTAAGCTACAAAGTGATGCACTGAGAGAGGCAATTTCCCAGGTGGTGAGTAATTCAAAGGAGAAAAATCGTAAATTCACCGAGACTATTGAGCTGCAAATTGGATTGAAGAACTATGATCCTCAGAAAGATAAGCGTTTCAGTGGTTCTGTTAAGCTTCCGCATATTCCTCGCCCTAAGATGAAAATCTGCATGCTCGGTGATGCTCAGCACGTTGAAGAGGCGGAAAAAATTGGGCTGGACTACATGGATGTGGAAGCACTGAAGAAACTCAATAAAAACAAAAAACTTGTGAAGAAGCTTGCCAAGAAATATCATGTTTTTCTAGCTTCTGAAGCAGTCATCAAGCAAATTCCTCGTCTTTTGGGGCCTGGTTTAAATAAGGCAGGCAAGTTGATTGCCTTGCTATTTGCTCTTCACATGAATGCAGGTAAATTTCCAACATTAGTGACTCATCAGGAGTCCTTGGAGTCAAAAGTTAATGAAACAAAGGCAATGGTGAAGTTTCAACTTAAGAAAGTTCTTTGTATGGGTGTTGCCGTTGGAAATTGCACAATGGAGGAGAAACAGATATTCCAGAATGTACAACTCAGTGTCAATTTCCTTGTTTCATTATTGAAGAAAAACTGGCAAAACGTGAGCGATAAGCAGAGACATTGTTCGAATATTGGAATCAAAGCAAAGCAGGAGAAGATGGAAAACAGTGAGGAGCAACAAAAGTACAGAGTCCGGAAATTGGAGATCTCGGACAAGGGCAAAGGCTTCATCGAGTTACTGCAACAACTCAGCGTTTGCGATTCCGTCTCCGACAAGGAATTCGAGGATCGATTTCGAGACCTGGATGTTCTCGGCGATGACCACGTGATCGGCGTGATCGAAGACGAGGCTTCCGGAAAGATCATTGCGACCGGGAGCGTGTTTATCGAGAAGAAGTTTTTGAGAAATTGCGGCAAAGTTGGGCATATTGAGGATGTTGTTGTGGATTCTAGCATTCGCGGGAAGCATTTGGGAAAGAGAATCATCAAGTTCCTCACGGAGCATGCGCGTTCAATGGGATGCTACAAGGTGATTCTTGATTGCAGCGTCGAGAACAAGGCGTTCTACGAGAAATGTGGCTTCCAGCAGAAATCTGTTCAGATGGCTATGTATTTTCCTTGA 1161 0.4324 MSKLQSDALREAISQVVSNSKEKNRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEKIGLDYMDVEALKKLNKNKKLVKKLAKKYHVFLASEAVIKQIPRLLGPGLNKAGKLIALLFALHMNAGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNCTMEEKQIFQNVQLSVNFLVSLLKKNWQNVSDKQRHCSNIGIKAKQEKMENSEEQQKYRVRKLEISDKGKGFIELLQQLSVCDSVSDKEFEDRFRDLDVLGDDHVIGVIEDEASGKIIATGSVFIEKKFLRNCGKVGHIEDVVVDSSIRGKHLGKRIIKFLTEHARSMGCYKVILDCSVENKAFYEKCGFQQKSVQMAMYFP 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01840 386 CDD NAT_SF 292 360 - -
Gma19g01840 386 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 241 386 IPR016181 -
Gma19g01840 386 Gene3D - 239 386 - -
Gma19g01840 386 SUPERFAMILY Ribosomal protein L1 3 215 IPR023674 -
Gma19g01840 386 Pfam Ribosomal protein L1p/L10e family 21 215 IPR028364 -
Gma19g01840 386 Gene3D - 1 118 - -
Gma19g01840 386 Gene3D - 150 222 - -
Gma19g01840 386 Pfam Acetyltransferase (GNAT) family 271 374 IPR000182 GO:0016407
Gma19g01840 386 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 2 219 - -
Gma19g01840 386 PANTHER 60S RIBOSOMAL PROTEIN L10A-3 2 219 - -
Gma19g01840 386 CDD Ribosomal_L1 9 214 IPR028364 -
Gma19g01840 386 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 242 386 IPR000182 GO:0016407
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01840 Gma-Chr19 47654471 47661146 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g01840 1 214 Cytoplasmic Ribosomal Protein Gene Family AT1G08360 82.243 1.61e-109 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Gma19g01840 Ribosomal_L1 4e-34 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01840 19 47654471 47661146 Gma19g01840 19 47654471 47661146 ECH