Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01816 atggacttccatctgaaggaatggagaaaccagCATGAGTCAGAGGAACAACAACATTCTACAAAGATGCCAAAACTTCTCCCTGAATCCCATCATCAACAGCCATCTGCCACTGCACTCCCTTTGTTTGTACCTGAACCCAACAGCAGCAGCAAAGTCAGCACCCTGTCAGATTCAACATTAGCAGCTGAAACTGAAACAATGACCACTACAACCACTAACAGATTATTTCCCAGGATGGGGAGCTACTTCAGCTTGTCTCAGTGGCAGGAGCTTGAGTTGCAGGCTTTGATATTCAGGTACATGTTGGCTGGTGCTGCTGTTCCTCCTGAACTCCTTCAACCAATCAAGAAAAGCCTTCTTCATTCCCCTCACTATTTCCTCCATCACCCTCTCCAACATTACCAACCTGCTGCTTTGTTGCAATCAGGGTATTGGGGTAGAGGAGCGATGgatccggagccagggcggtgccggagaaccgacggcaagaaatggcggtgctcgagggacgtggtggctgggcaaaagtactgtgagcgccacatgcatcgtggaagaaaccgttcaagaaagcctgtggaaCTACCCACACCAACTAGTGCTAATAATTGTGATGGTGGATCTCTAGGACTAGGTGCTTCTTCATCTTCCATTTCTTCACCACCCCTAGCTTCTGCTTCACTCAAATCCCCATTTGATCTTCTTCGTCTTAATGAACGTTCCTCTGGGACCAAGAATGAAGACGAAGACCATGTGGGTGGGGATGGCAGATCAGGTGGAGGGGGTGGCCATATGCTGAGGCATTTCTTCGATGATTGGCCACGATCACTGCAAGACTCTGACAACGTTGAAAACAATGCTGCTGGCCCTAGCCTCTCTATTTCAATGCCCGGAAATGCTGCTGCTGCTTCCTCGGATGTGTCATTGAAATTGTCCACGGGCTATGGAGAGGACCCAGGCCCAAGAAATGAGAATGTGGGCCTCGTGGCAGAGCAGCTGCAGTTGAATTGGGCCGGAGGATGGGCCTCGTCTAATCAAGTGGCTTCCATGGGAGGACCACTGGCCGAGGCACTCAGATCATCTATTTCAACTTCATCTCCCACTAGTGTTTTGCATCACTTGCCTCGTGGTTCTGGATCTGAGACCAGCATTATTAGCACCTGA 1167 0.4216 MDFHLKEWRNQHESEEQQHSTKMPKLLPESHHQQPSATALPLFVPEPNSSSKVSTLSDSTLAAETETMTTTTTNRLFPRMGSYFSLSQWQELELQALIFRYMLAGAAVPPELLQPIKKSLLHSPHYFLHHPLQHYQPAALLQSGYWGRGAMDPEPGRCRRTDGKKWRCSRDVVAGQKYCERHMHRGRNRSRKPVELPTPTSANNCDGGSLGLGASSSSISSPPLASASLKSPFDLLRLNERSSGTKNEDEDHVGGDGRSGGGGGHMLRHFFDDWPRSLQDSDNVENNAAGPSLSISMPGNAAAASSDVSLKLSTGYGEDPGPRNENVGLVAEQLQLNWAGGWASSNQVASMGGPLAEALRSSISTSSPTSVLHHLPRGSGSETSIIST 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01816 388 Pfam WRC 153 195 IPR014977 -
Gma19g01816 388 PANTHER GROWTH-REGULATING FACTOR 3 8 388 - -
Gma19g01816 388 ProSiteProfiles WRC domain profile. 152 196 IPR014977 -
Gma19g01816 388 Pfam QLQ 84 116 IPR014978 GO:0005524|GO:0005634|GO:0006355
Gma19g01816 388 ProSiteProfiles QLQ domain profile. 83 118 IPR014978 GO:0005524|GO:0005634|GO:0006355
Gma19g01816 388 PANTHER - 8 388 IPR031137 GO:0005634|GO:0006351|GO:0032502
Gma19g01816 388 MobiDBLite consensus disorder prediction 242 256 - -
Gma19g01816 388 SMART QLQ_2 82 118 IPR014978 GO:0005524|GO:0005634|GO:0006355
Gma19g01816 388 MobiDBLite consensus disorder prediction 242 270 - -
Gma19g01816 388 MobiDBLite consensus disorder prediction 1 63 - -
Gma19g01816 388 MobiDBLite consensus disorder prediction 366 388 - -
Gma19g01816 388 MobiDBLite consensus disorder prediction 1 26 - -
Gma19g01816 388 MobiDBLite consensus disorder prediction 31 63 - -
Gma19g01816 388 MobiDBLite consensus disorder prediction 194 226 - -
Gma19g01816 388 MobiDBLite consensus disorder prediction 182 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01816 Gma-Chr19 47452135 47455112 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g01816 1 375 GRF Transcription Factor Family AT3G52910 48.628 7.86e-91 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Gma19g01816 WRC 2.4e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01816 - - gmx:100814842 731.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01816 19 47452135 47455112 Gma19g01816 19 47452135 47455112 ECH
Gma19g01816 19 47452135 47455112 Gma03g01770 03 43802417 43805419 GST
Gma19g01816 19 47452135 47455112 Gma10g00620 10 6723157 6726188 PCT
Gma19g01816 19 47452135 47455112 Gma13g01311 13 27641471 27644196 PCT
Gma10g00620 10 6723157 6726188 Gma19g01816 19 47452135 47455112 PCT
Gma13g01311 13 27641471 27644196 Gma19g01816 19 47452135 47455112 PCT